petitRADTRANS.slurm_runs.sbatch#
Make slurm sbatch files.
Functions#
|
Find the line separator of a line. |
|
Make a new srun script file from a template file, updating some options. |
Module Contents#
- petitRADTRANS.slurm_runs.sbatch.get_line_separator(line)#
- Find the line separator of a line.
Assume that the line separator is at the end of the line. Possible line separators are
(CR), (LF) or (CRLF).
- Args:
line: any string ending with a line separator
- Returns:
linesep: the line separator as a string, or None if no valid line separator was found
- petitRADTRANS.slurm_runs.sbatch.make_srun_script_from_template(filename, template_filename, job_name='petitRADTRANS_job', nodes=1, tasks_per_node=1, cpus_per_task=1, time='0-00:01:00', srun_lines=None)#
Make a new srun script file from a template file, updating some options. The template script has to be a working slurm script. All the #SBATCH option lines must be at the beginning of the template script.
- Args:
filename: name of the new file to generate template_filename: any working sbatch script job_name: name of the slurm job allocation nodes: number of nodes to allocate to the slurm job tasks_per_node: number of tasks to be invoked on each node, equivalent to the number of processes for MPI cpus_per_task: number of processors per task, relevant when launching application with a required number of CPUs time: (days-hours:minutes:seconds) total job run time limit srun_lines: if None, do nothing; otherwise, if a srun line is present in the template, modify it, else add the
lines at the end of the script. Must be a list of strings ending with a line separator.