Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z _ __absorber_present (petitRADTRANS.radtrans.Radtrans attribute) __array_priority__ (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) __available_priors (petitRADTRANS.retrieval.parameter.RetrievalParameter attribute) __call__() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood method) (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform method) (petitRADTRANS.sbi.flows.CouplingConditioner method) (petitRADTRANS.sbi.flows.transforms.CouplingConditioner method) __check_model_functions_map() (petitRADTRANS.spectral_model.SpectralModel method) __check_model_parameters_relevance() (petitRADTRANS.spectral_model.SpectralModel method) __check_none_model_parameters() (petitRADTRANS.spectral_model.SpectralModel static method) __cloud_color (in module petitRADTRANS.plotlib.style) __contains__() (petitRADTRANS.retrieval.runtime.PhysicalParams method) __copy__() (petitRADTRANS.utils.LockedDict method) __dat_opacity_files_warning_message (petitRADTRANS.radtrans.Radtrans attribute) __deepcopy__() (petitRADTRANS.utils.LockedDict method) __elemental_abundances (in module petitRADTRANS.chemistry.clouds) __get_prt2_input_data_subpaths() (in module petitRADTRANS.opacities.file_conversion) __getattr__() (petitRADTRANS.opacities.file_conversion._MissingFortranExtension method) (petitRADTRANS.radtrans.Radtrans method) (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) __getitem__() (petitRADTRANS.retrieval.runtime.PhysicalParams method) __getstate__() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood method) (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform method) __init_pipeline() (in module petitRADTRANS.retrieval.preparing) __init_pipeline_outputs() (in module petitRADTRANS.retrieval.preparing) __init_velocities() (petitRADTRANS.spectral_model.SpectralModel static method) __large_figure_font_size (in module petitRADTRANS.plotlib.style) __line_opacity_property_setting_warning_message (petitRADTRANS.radtrans.Radtrans attribute) __medium_figure_font_size (in module petitRADTRANS.plotlib.style) __megabyte (in module petitRADTRANS.cli.prt_cli) __metals (in module petitRADTRANS.chemistry.clouds) __modify_isotope_string() (petitRADTRANS.opacities.opacities.Opacity static method) __molar_masses (in module petitRADTRANS.chemistry.clouds) __other_gases_color (in module petitRADTRANS.plotlib.style) __post_init__() (petitRADTRANS.retrieval.runtime.ModelInputs method) (petitRADTRANS.sbi.config.FlowConfig method) (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.FlowConfig method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) __print_missing_data_file_message() (in module petitRADTRANS.opacities.file_conversion) __print_skipping_message() (in module petitRADTRANS.opacities.file_conversion) __property_setting_warning_message (petitRADTRANS.radtrans.Radtrans attribute) __recursive_merge_contiguous_isotopes() (petitRADTRANS.opacities.opacities.Opacity class method) __remove_files() (in module petitRADTRANS.opacities.file_conversion) __retrieval_parameters_interface() (petitRADTRANS.spectral_model.SpectralModel static method) __scattering_in_transmission (petitRADTRANS.radtrans.Radtrans attribute) __setattr__() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) __setitem__() (petitRADTRANS.utils.LockedDict method) __setstate__() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood method) (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform method) __sl (petitRADTRANS.opacities.opacities.Opacity attribute) __small_figure_font_size (in module petitRADTRANS.plotlib.style) __species_color (in module petitRADTRANS.plotlib.style) __sum_opacities (petitRADTRANS.radtrans.Radtrans attribute) __sysrem_iteration_orders_a() (in module petitRADTRANS.retrieval.preparing) __sysrem_iteration_orders_c() (in module petitRADTRANS.retrieval.preparing) __tiny_figure_font_size (in module petitRADTRANS.plotlib.style) __version__ (in module petitRADTRANS) _add_covariance_hyperparameters() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) _add_uniform_free_parameter() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) _advance_rng_for_batch() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _affine_arrays() (petitRADTRANS.retrieval.runtime.ParameterLayout method) _affine_compose() (in module petitRADTRANS.radtrans_core.linalg) _ALIAS_GROUPS (in module petitRADTRANS.retrieval.parameter_aliases) _amorphous_structure (petitRADTRANS.opacities.opacities.Opacity attribute) _amorphous_structure_id_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _anisotropic_cloud_scattering (petitRADTRANS.radtrans.Radtrans attribute) _anisotropic_cloud_scattering_emission (petitRADTRANS.radtrans.Radtrans attribute) _append_array() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter method) _append_observations() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter method) _apply_noise() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _apply_noise_batched() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _as_auxiliary_outputs() (in module petitRADTRANS.retrieval.models) _as_filtered_auxiliary_outputs() (in module petitRADTRANS.retrieval.models) _as_planck_temperature_array() (in module petitRADTRANS.radtrans_core.physics_core) _as_scalar() (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform static method) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform static method) _as_structural_int() (in module petitRADTRANS.retrieval.models) _as_wavelength_vector() (in module petitRADTRANS.retrieval.covariance) _assemble_cloud_opacity_outputs() (in module petitRADTRANS.opacities.clouds) _available_fields (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter attribute) _batch_embeddings() (petitRADTRANS.sbi.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior static method) _before_write() (petitRADTRANS.opacities.opacities.Opacity class method) _best_checkpoint_directory (petitRADTRANS.sbi.SBITrainer property) (petitRADTRANS.sbi.training.SBITrainer property) _build_artifact_metadata_payload() (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) _build_blackjax_logdensity_interface() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _build_cloud_metadata() (in module petitRADTRANS.chemistry.core) _build_cloud_species_mass_fractions() (in module petitRADTRANS.opacities.clouds) _build_device_likelihood_wrapper() (in module petitRADTRANS.retrieval.sampler) _build_dynesty_interface() (petitRADTRANS.retrieval.sampler.DynestySampler class method) _build_easychem_mass_fractions() (in module petitRADTRANS.chemistry.core) _build_equal_weight_posterior() (petitRADTRANS.retrieval.sampler.DynestySampler method) _build_equal_weight_results() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _build_estimator_config() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) _build_flow() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) _build_isotopologue_ratio_mass_fractions() (in module petitRADTRANS.chemistry.core) _build_jaxns_interface() (petitRADTRANS.retrieval.sampler.JAXNSSampler class method) _build_jaxns_prior() (in module petitRADTRANS.retrieval.parameter) _build_jaxns_sampler_interface() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _build_jitted_log_likelihood() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood method) _build_model_context_from_parameters() (in module petitRADTRANS.retrieval.models) _build_photometry_metadata() (petitRADTRANS.retrieval.data.PhotometryData method) _build_pressure_varying_mass_fraction_profile() (in module petitRADTRANS.chemistry.core) _build_processed_results() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _build_python_files_hierarchy() (in module petitRADTRANS.__setup_meson_build) _build_runtime_emission_model_inputs() (in module petitRADTRANS.retrieval.models) _build_runtime_transmission_model_inputs() (in module petitRADTRANS.retrieval.models) _build_sampler_context() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _build_samples_for_export() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _build_samples_from_sampler_results() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _build_serialized_metadata() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) _build_star_spectrum_cache_key() (in module petitRADTRANS.stellar_spectra.phoenix) _build_termination_condition() (petitRADTRANS.retrieval.sampler.JAXNSSampler class method) _build_timestep_params() (in module petitRADTRANS.retrieval.models) _build_unconstrained_mcmc_interface() (in module petitRADTRANS.retrieval.sampler) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _cache_covariance_factorization() (petitRADTRANS.retrieval.data.Data method) _calculate_asymmetric_uncertainty_jax() (in module petitRADTRANS.planet) _calculate_chi_squared_covariance() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) _calculate_chi_squared_uncertainties() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) _calculate_cloud_base_pressure_generic() (in module petitRADTRANS.chemistry.clouds) _calculate_cloud_mass_fraction() (in module petitRADTRANS.chemistry.clouds) _calculate_flux() (petitRADTRANS.radtrans.Radtrans method) _calculate_flux_kernel() (petitRADTRANS.radtrans.Radtrans method) _calculate_opacities() (petitRADTRANS.radtrans.Radtrans method) _calculate_radius_hydrostatic_equilibrium() (petitRADTRANS.radtrans.Radtrans method) _calculate_transit_radii() (petitRADTRANS.radtrans.Radtrans method) _calculate_transit_radii_full_kernel() (petitRADTRANS.radtrans.Radtrans method) _CALIBRATION_SELECTION_PENALTY_WEIGHT (in module petitRADTRANS.sbi.flows.regularization) _call_model_generating_function() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _CARTESIAN_REQUIRED_SUFFIXES (in module petitRADTRANS.retrieval.models) _cast_distribution_to_jax_dtype() (in module petitRADTRANS.retrieval.parameter) _charge_chars (petitRADTRANS.opacities.opacities.Opacity attribute) _charge_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _charge_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _charge_symbols (petitRADTRANS.opacities.opacities.Opacity attribute) _charges (petitRADTRANS.opacities.opacities.Opacity attribute) _check_anisotropic_cloud_scattering() (in module petitRADTRANS.validation) _check_data_model_rules() (in module petitRADTRANS.ccf.ccf) _check_differentiable_support() (in module petitRADTRANS.retrieval.sampler) _check_errors() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _check_input_data_file_existence() (in module petitRADTRANS.validation) _check_line_opacity_mode() (in module petitRADTRANS.validation) _check_path_input_data() (in module petitRADTRANS.validation) _check_pressures() (in module petitRADTRANS.validation) _check_return_clear_spectrum_relevance() (in module petitRADTRANS.validation) _check_spectrum_wavelengths_rules() (in module petitRADTRANS.ccf.ccf) _check_wavelength_boundaries() (in module petitRADTRANS.validation) _checkpoint_backend_fallback_reason (petitRADTRANS.sbi.SBITrainer attribute) (petitRADTRANS.sbi.training.SBITrainer attribute) _checkpoint_directory_for_kind() (petitRADTRANS.sbi.SBITrainer method) (petitRADTRANS.sbi.training.SBITrainer method) _checkpoint_path() (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _checkpointer (petitRADTRANS.sbi.training.OrbaxCheckpointBackend attribute) _chemical_table_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _chunk_size (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter attribute) _CIA_OPACITY_CUTOFF (in module petitRADTRANS.opacities.cia) _cias_loaded_opacities (petitRADTRANS.radtrans.Radtrans attribute) _CK_CHUNK_SIZE_DEFAULT (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _CK_MIX_TARGETS (in module petitRADTRANS.radtrans_core.ck_mixing_ffi) _clean_input_data_mac_junk_files() (in module petitRADTRANS.opacities.file_conversion) _clip_cube_support() (in module petitRADTRANS.sbi.flows.cube) _clip_easychem_temperatures() (in module petitRADTRANS.retrieval.models) _close_dynesty_pool() (petitRADTRANS.retrieval.sampler.DynestySampler method) _cloud_species (petitRADTRANS.radtrans.Radtrans attribute) _clouds_have_effect() (petitRADTRANS.radtrans.Radtrans method) _clouds_loaded_opacities (petitRADTRANS.radtrans.Radtrans attribute) _coerce_best_fit_auxiliary_outputs() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _coerce_block_array() (in module petitRADTRANS.sbi.inference) _coerce_parameter_sample_matrix() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _coerce_termination_condition_mapping() (petitRADTRANS.retrieval.sampler.JAXNSSampler static method) _collapse_shared_epoch_axis() (petitRADTRANS.retrieval.data.TimeSeriesData static method) _collect_best_fit_summary() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _collect_evidence_approximations() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _collect_sampler_summary() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _colliding_species_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _combine_ck_ffi_bwd() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _combine_ck_ffi_fwd() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _combine_ck_opacities_ffi() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _combine_ck_opacities_jax() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _combine_deferred_clear_opacities() (petitRADTRANS.radtrans.Radtrans method) _compute_additional_continuum_opacities() (petitRADTRANS.radtrans.Radtrans static method) _compute_boole_planck_flux_matrix() (in module petitRADTRANS.radtrans_core.physics_core) _compute_boole_sample_frequencies() (in module petitRADTRANS.radtrans_core.physics_core) _compute_cloud_opacities() (in module petitRADTRANS.opacities.clouds) _compute_cloud_opacities_using_particle_size_grid() (in module petitRADTRANS.radtrans_core.cloud_core) _compute_cloud_opacity_grids_from_known_radii() (in module petitRADTRANS.opacities.clouds) _compute_cloud_opacity_grids_with_derived_radii() (in module petitRADTRANS.opacities.clouds) _compute_cloud_scattering_reduction_factor() (in module petitRADTRANS.radtrans_core.cloud_core) _compute_feautrier_radiative_transfer_chunk() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _compute_gravity() (in module petitRADTRANS.retrieval.models) _compute_h_ratios() (in module petitRADTRANS.chemistry.utils) _compute_mean_radius_hansen_single() (in module petitRADTRANS.radtrans_core.cloud_core) _compute_mean_radius_single() (in module petitRADTRANS.radtrans_core.cloud_core) _compute_object_array_log_likelihood() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _compute_planck_frequency_cubed_term() (in module petitRADTRANS.radtrans_core.physics_core) _compute_planck_function_integral() (in module petitRADTRANS.radtrans_core.physics_core) _compute_planck_spectral_radiance_matrix() (in module petitRADTRANS.radtrans_core.physics_core) _compute_planet_star_centers_distance() (petitRADTRANS.spectral_model.SpectralModel static method) _compute_relative_velocities_wrap() (petitRADTRANS.spectral_model.SpectralModel static method) _compute_selected_cloud_branch() (in module petitRADTRANS.opacities.clouds) _compute_total_optical_depths() (in module petitRADTRANS.opacities.optical_depths) _compute_transit_fractional_light_loss_uniform() (petitRADTRANS.spectral_model.SpectralModel static method) _compute_z_ratios() (in module petitRADTRANS.chemistry.utils) _concat_or_none() (petitRADTRANS.retrieval.sampler.NumPyroSampler static method) _concatenate_batched_observation_outputs() (in module petitRADTRANS.sbi.simulator) _concatenate_simulation_batches() (petitRADTRANS.sbi.RuntimeSimulator static method) (petitRADTRANS.sbi.simulator.RuntimeSimulator static method) _condensed_matter_states (petitRADTRANS.opacities.opacities.Opacity attribute) _config_file (petitRADTRANS.config.configuration.PetitradtransConfigParser attribute) _configure_compilation_cache() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _configure_dynesty_pool() (petitRADTRANS.retrieval.sampler.DynestySampler class method) _constant_delta_wavelength (petitRADTRANS.opacities.opacities.Opacity attribute) _constant_delta_wavenumber (petitRADTRANS.opacities.opacities.Opacity attribute) _constant_resolving_power (petitRADTRANS.opacities.opacities.Opacity attribute) _contains_isotope() (in module petitRADTRANS.chemistry.core) _continuum_cia_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _continuum_clouds_opacities_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _convert_nasa_exoplanet_archive() (petitRADTRANS.planet.Planet static method) _convolve_constant() (petitRADTRANS.spectral_model.SpectralModel static method) _convolve_running() (in module petitRADTRANS.radtrans_core.spectrum_utils) (petitRADTRANS.spectral_model.SpectralModel static method) _convolve_wrap() (petitRADTRANS.spectral_model.SpectralModel static method) _corner_wrap() (in module petitRADTRANS.plotlib.plotlib) _correlated_k_opacities_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _correlated_k_opacities_dat2h5_external_species() (in module petitRADTRANS.opacities.file_conversion) _count_data_points() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _count_free_parameters() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _crystalline_structure (petitRADTRANS.opacities.opacities.Opacity attribute) _cube_epsilon() (in module petitRADTRANS.sbi.flows.cube) _cube_log_abs_det_jacobian() (in module petitRADTRANS.sbi.flows.cube) _cube_to_unconstrained() (in module petitRADTRANS.sbi.flows.cube) _data_are_valid() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _db_lock() (in module petitRADTRANS.synthetic_photometry) _default_category (petitRADTRANS.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.Opacity attribute) _default_cia_resolving_power (petitRADTRANS.opacities.opacities.Opacity attribute) _default_cloud_resolving_power (petitRADTRANS.opacities.opacities.Opacity attribute) _default_config (petitRADTRANS.config.configuration.PetitradtransConfigParser attribute) _DEFAULT_CONV_HALF_WINDOW (in module petitRADTRANS.radtrans_core.spectrum_utils) _default_correlated_k_resolving_power (petitRADTRANS.opacities.opacities.Opacity attribute) _default_covariance_parameter_priors() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig static method) (petitRADTRANS.retrieval.RetrievalConfig static method) _default_extension (petitRADTRANS.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.Opacity attribute) _default_file_names (petitRADTRANS.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.opacities.CloudOpacity attribute) _default_line_by_line_resolving_power (petitRADTRANS.opacities.opacities.Opacity attribute) _default_rebinning_wavelength_range (petitRADTRANS.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity attribute) _default_resolving_power (petitRADTRANS.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.Opacity attribute) _default_use_pool() (petitRADTRANS.retrieval.sampler.DynestySampler static method) _default_wavelength_range (petitRADTRANS.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.LineByLineOpacity attribute) (petitRADTRANS.opacities.opacities.CIAOpacity attribute) (petitRADTRANS.opacities.opacities.CloudOpacity attribute) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity attribute) (petitRADTRANS.opacities.opacities.LineByLineOpacity attribute) _dense_inverse_mass_from_hessian() (in module petitRADTRANS.retrieval.sampler) _detect_jax_devices() (in module petitRADTRANS.retrieval.retrieval) _DIAGNOSTIC_EDGE_THRESHOLD (in module petitRADTRANS.sbi.flows.regularization) _DIAGNOSTIC_FLOOR_RELATIVE_TOLERANCE (in module petitRADTRANS.sbi.flows.regularization) _diagonal_inverse_mass_from_hessian() (in module petitRADTRANS.retrieval.sampler) _directory (petitRADTRANS.config.configuration.PetitradtransConfigParser attribute) _dynesty_pool (petitRADTRANS.retrieval.sampler.DynestySampler attribute) _eager_grids_match() (in module petitRADTRANS.retrieval.utils) _ELBO_STABILITY_CUBE_EDGE_HIT_RATE (in module petitRADTRANS.sbi.flows.regularization) _ELBO_STABILITY_INVERSE_FORWARD_MAX_ABS_ERROR (in module petitRADTRANS.sbi.flows.regularization) _ELBO_STABILITY_LOGDET_CLOSURE_MAX_ABS_ERROR (in module petitRADTRANS.sbi.flows.regularization) _ELEMENT_NUMBER_TO_SYMBOL (in module petitRADTRANS.chemistry.prt_molmass) _ELEMENT_SYMBOL_TO_NUMBER (in module petitRADTRANS.chemistry.prt_molmass) _emission_angle_grid (petitRADTRANS.radtrans.Radtrans attribute) _EMISSION_RUNTIME_AUXILIARY_OUTPUT_EXCLUSIONS (in module petitRADTRANS.retrieval.models) _encode_block() (petitRADTRANS.sbi.encoders.ObservationEncoder method) (petitRADTRANS.sbi.ObservationEncoder method) _encode_block_raw() (petitRADTRANS.sbi.encoders.PhotometryPointEncoder method) (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder method) (petitRADTRANS.sbi.PhotometryPointEncoder method) _ensure_jax_sampler_model_support() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _error_check_model_function() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _error_type (in module petitRADTRANS.retrieval.retrieval) _evaluate_model_group() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) _evaluate_sample_log_likelihoods() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _evaluate_scalar() (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) _expand_cloud_parameter_column() (in module petitRADTRANS.opacities.clouds) _explained_error() (petitRADTRANS.spectral_model.SpectralModel static method) _extension_opacity (petitRADTRANS.opacities.opacities.Opacity attribute) _extract_figure() (petitRADTRANS.retrieval.sampler.Sampler static method) _FEAUTRIER_INV_DTAU2_CAP (in module petitRADTRANS.radtrans_core.linalg) _FEAUTRIER_INV_DTAU_CAP (in module petitRADTRANS.radtrans_core.linalg) _FEAUTRIER_THOMAS_MIN_BATCH (in module petitRADTRANS.radtrans_core.linalg) _feautrier_use_thomas() (in module petitRADTRANS.radtrans_core.linalg) _file (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter attribute) _file_path (petitRADTRANS.sbi.dataset.HDF5StoredSimulationDataset attribute) _filter_patchy_clouds() (in module petitRADTRANS.opacities.clouds) _finalize_ck_opacity_shape() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _finalize_sampler_run() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _FINGERPRINT_SCHEMA_VERSION (in module petitRADTRANS.sbi.task) _fixed_model_parameters (petitRADTRANS.spectral_model.SpectralModel attribute) _flatten_free_parameter_values() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _flow_space_parameters() (in module petitRADTRANS.sbi.flows.cube) _flow_validation_selection_metric() (in module petitRADTRANS.sbi.flows.regularization) _flow_validation_stability_metrics() (in module petitRADTRANS.sbi.flows.regularization) _forward() (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder method) _forward_model_signature() (petitRADTRANS.sbi.SBITask method) (petitRADTRANS.sbi.task.SBITask method) _free_parameter_names_cache (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) _freeze_json_value() (in module petitRADTRANS.sbi.compatibility) _frequency_grid_misalignment_tolerance (petitRADTRANS.radtrans.Radtrans attribute) _gas_continuum_contributors (petitRADTRANS.radtrans.Radtrans attribute) _gas_matter_state (petitRADTRANS.opacities.opacities.Opacity attribute) _get_active_abundance_profile_mode() (in module petitRADTRANS.chemistry.core) _get_active_sampler_results() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _get_base_cia_names() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.registry) _get_base_cloud_names() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.registry) _get_base_correlated_k_names() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.registry) _get_base_line_by_line_names() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.registry) _get_batched_full_range_model_outputs() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _get_cached_cloud_metadata() (in module petitRADTRANS.chemistry.core) _get_cached_molmass_name() (in module petitRADTRANS.chemistry.prt_molmass) _get_cached_species_elements() (in module petitRADTRANS.chemistry.prt_molmass) _get_cached_species_molar_mass() (in module petitRADTRANS.chemistry.utils) _get_cli_functions() (in module petitRADTRANS._input_data) _get_clipped_contribution_output() (petitRADTRANS.retrieval.plotting.RetrievalPlotter static method) _get_cloud_species_base_name() (in module petitRADTRANS.chemistry.clouds) _get_complete_coverage_cloud_species() (petitRADTRANS.radtrans.Radtrans method) _get_cpu_device() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _get_default_rebinning_wavelength_range() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.load) (in module petitRADTRANS.opacities.registry) _get_default_rebinning_wavenumber_grid() (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) _get_directories_dict() (in module petitRADTRANS.__setup_meson_build) _get_equal_weight_samples_path() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _get_evidence_path() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _get_html() (in module petitRADTRANS.cli.prt_cli) _get_input_data_file_not_found_error_message() (in module petitRADTRANS._input_data) _get_input_file_from_keeper() (in module petitRADTRANS._input_data) _get_log_dir() (petitRADTRANS.retrieval.sampler.UltranestSampler method) _get_log_weight_samples() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _get_model_functions_map() (petitRADTRANS.spectral_model.SpectralModel method) _get_mpi_context() (in module petitRADTRANS.opacities.opacities) _get_named_samples_mapping() (petitRADTRANS.retrieval.sampler.JAXNSSampler static method) _get_or_create_group() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter static method) _get_output_prefix() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler method) (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _get_parameter_alias_value() (in module petitRADTRANS.chemistry.core) _get_parameter_layout() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _get_parameter_names_path() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _get_parameter_range() (in module petitRADTRANS.plotlib.plotlib) _get_parameter_value() (in module petitRADTRANS.retrieval.utils) _get_partial_coverage_cloud_species() (petitRADTRANS.radtrans.Radtrans method) _get_photosphere_optical_depths() (petitRADTRANS.radtrans.Radtrans method) _get_prt2_cia_names() (in module petitRADTRANS.opacities.file_conversion) _get_prt2_cloud_names() (in module petitRADTRANS.opacities.file_conversion) _get_prt2_correlated_k_names() (in module petitRADTRANS.opacities.file_conversion) _get_prt2_line_by_line_names() (in module petitRADTRANS.opacities.file_conversion) _get_raw_results_path() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _get_results_field() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _get_runtime() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _get_samples_archive_path() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) (petitRADTRANS.retrieval.sampler.Sampler method) _get_species_molar_mass() (in module petitRADTRANS.chemistry.clouds) _get_spectral_modification_functions_map() (petitRADTRANS.spectral_model.SpectralModel method) _get_spectral_parameters() (petitRADTRANS.spectral_model.SpectralModel method) _get_static_bool_parameter() (in module petitRADTRANS.chemistry.core) _get_sub_path() (petitRADTRANS.opacities.opacities.Opacity static method) _get_total_mass() (in module petitRADTRANS.chemistry.clouds) _get_ultranest_vectorization_disable_reason() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _GLOBAL_KERNEL_ALIASES (in module petitRADTRANS.retrieval.covariance) _handle_grid_misalignment() (in module petitRADTRANS.validation) _has_explicit_cloud_base() (in module petitRADTRANS.chemistry.core) _has_isotope() (petitRADTRANS.opacities.opacities.Opacity static method) _has_only_legacy_model_groups() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _has_partial_coverage_background_cloud() (petitRADTRANS.radtrans.Radtrans static method) _has_truthy_parameter() (in module petitRADTRANS.chemistry.core) _import_bs4() (in module petitRADTRANS.cli.prt_cli) _import_selenium() (in module petitRADTRANS.cli.prt_cli) _infer_forward_model_family() (petitRADTRANS.sbi.SBITask static method) (petitRADTRANS.sbi.task.SBITask static method) _infer_modality() (petitRADTRANS.sbi.SBITask static method) (petitRADTRANS.sbi.task.SBITask static method) _infer_model_function_contract() (in module petitRADTRANS.retrieval.models) _init_cloud_background_continuum() (in module petitRADTRANS.opacities.clouds) _init_cloud_branch_outputs() (in module petitRADTRANS.opacities.clouds) _init_frequency_grid() (petitRADTRANS.radtrans.Radtrans method) _init_frequency_grid_from_frequency_grid() (petitRADTRANS.radtrans.Radtrans static method) _init_frequency_grid_from_lines() (petitRADTRANS.radtrans.Radtrans method) _init_species_name_elements() (petitRADTRANS.opacities.opacities.Opacity class method) _init_spectral_function() (petitRADTRANS.radtrans.Radtrans method) _initialize_cloud_species_inputs() (in module petitRADTRANS.opacities.clouds) _initialize_hansen_b() (in module petitRADTRANS.opacities.clouds) _initialize_runtime_pressure_grid() (in module petitRADTRANS.retrieval.models) _instance (petitRADTRANS.config.configuration.PetitradtransConfigParser attribute) _integrate_cloud_opacities_from_dn_dr() (in module petitRADTRANS.radtrans_core.cloud_core) _interpolate_linear_sorted() (in module petitRADTRANS.radtrans) _interpolate_photosphere_radius_profile() (petitRADTRANS.radtrans.Radtrans method) _interpolate_stacked_species_opacities() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) _interpolate_stacked_species_opacities_flat() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) _interpolate_stacked_species_opacities_summed() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) _INV_LOSCHMIDT_SQUARED (in module petitRADTRANS.opacities.cia) _invalid_sample_mask() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _inverse_scalar() (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) _inverse_scalar_with_diagnostics() (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) _is_full_easychem_requested() (in module petitRADTRANS.retrieval.models) _is_plotting_root() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) _is_scalar_like() (in module petitRADTRANS.retrieval.models) _isotope_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _ISOTOPE_RATIO_SPECS (in module petitRADTRANS.chemistry.core) _isotope_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _iter_batches_cached() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) _iter_batches_streaming() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) _jax_dtype (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _jax_module (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _JAXNS_TERMINATION_FIELDS (in module petitRADTRANS.retrieval.sampler) _jitted_log_likelihood (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _join_spectral_information() (petitRADTRANS.opacities.opacities.Opacity class method) _jsonable() (in module petitRADTRANS.sbi.artifacts) _latest_checkpoint_directory (petitRADTRANS.sbi.SBITrainer property) (petitRADTRANS.sbi.training.SBITrainer property) _lbfgs_polish() (in module petitRADTRANS.retrieval.optimal_estimation) _line_by_line_opacities_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _line_by_line_opacity_sampling (petitRADTRANS.radtrans.Radtrans attribute) _line_opacity_mode (petitRADTRANS.radtrans.Radtrans attribute) _line_species (petitRADTRANS.radtrans.Radtrans attribute) _lines_loaded_opacities (petitRADTRANS.radtrans.Radtrans attribute) _liquid_matter_state (petitRADTRANS.opacities.opacities.Opacity attribute) _load_checkpoint() (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _load_entries() (petitRADTRANS.sbi.artifacts.FileArtifactRegistry method) _load_jaxns_raw_results_samples() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _load_sample_archive_results() (petitRADTRANS.retrieval.sampler.Sampler method) _load_samples_archive() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _load_state() (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood method) _load_training_artifacts() (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator static method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator static method) (petitRADTRANS.sbi.PersistentPosteriorEstimator static method) _loaded (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable attribute) _local_attributes (petitRADTRANS.retrieval.plotting.RetrievalPlotter attribute) _LOCAL_KERNEL_ALIASES (in module petitRADTRANS.retrieval.covariance) _locked (petitRADTRANS.utils.LockedDict attribute) _log_barrier_below_target() (in module petitRADTRANS.sbi.flows.regularization) _log_likelihood() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood static method) _log_likelihood_jax_legacy() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) _log_likelihood_legacy() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _loss() (petitRADTRANS.sbi.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior static method) _make() (petitRADTRANS.config.configuration.PetitradtransConfigParser class method) _manifest (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter attribute) _match_function() (petitRADTRANS.opacities.opacities.Opacity class method) _materialize_raw_results() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _matter_states (petitRADTRANS.opacities.opacities.Opacity attribute) _maybe_add_opaque_cloud_deck() (in module petitRADTRANS.opacities.clouds) _maybe_add_power_law_cloud_scattering() (in module petitRADTRANS.opacities.clouds) _maybe_calculate_photosphere_radius() (petitRADTRANS.radtrans.Radtrans method) _maybe_compute_cloud_branch() (in module petitRADTRANS.opacities.clouds) _mean_spectral_log_scale() (in module petitRADTRANS.sbi.flows.objectives) _merge_contiguous_isotopes() (petitRADTRANS.opacities.opacities.Opacity class method) _min_delta (petitRADTRANS.sbi.SBITrainer property) (petitRADTRANS.sbi.training.SBITrainer property) _minimum_bin_ratio_statistics() (in module petitRADTRANS.sbi.flows.regularization) _minimum_cube_spline_bound() (in module petitRADTRANS.sbi.flows.cube) _minus_char (petitRADTRANS.opacities.opacities.Opacity attribute) _minus_symbol (petitRADTRANS.opacities.opacities.Opacity attribute) _MISSING_FLOAT (in module petitRADTRANS.opacities.clouds) (in module petitRADTRANS.opacities.continuum) (in module petitRADTRANS.opacities.load) (in module petitRADTRANS.radtrans) _MISSING_NEG_INF (in module petitRADTRANS.opacities.clouds) (in module petitRADTRANS.opacities.continuum) (in module petitRADTRANS.opacities.load) (in module petitRADTRANS.radtrans) _MissingFortranExtension (class in petitRADTRANS.opacities.file_conversion) _MODE_ALIASES (in module petitRADTRANS.retrieval.covariance) _MODEL_CONTRACT_ATTRIBUTE (in module petitRADTRANS.retrieval.models) _model_function_digest() (in module petitRADTRANS.sbi.task) _model_result_to_legacy_output() (in module petitRADTRANS.retrieval.models) _mpi_checked (in module petitRADTRANS.opacities.opacities) (in module petitRADTRANS.retrieval._mpi) _multivariate_normal_logpdf() (in module petitRADTRANS.retrieval.optimal_estimation) _n_dims (petitRADTRANS.retrieval.sampler.PymultinestSampler attribute) _n_free_params_total_retrieval (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) _name (petitRADTRANS.opacities.file_conversion._MissingFortranExtension attribute) _name_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _natural_abundance_string (petitRADTRANS.opacities.opacities.Opacity attribute) _next_key() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _ng_accelerated_batched() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _noop_opacity_fn() (in module petitRADTRANS.radtrans) _normalize_cloud_species_selection() (in module petitRADTRANS.validation) _normalize_legacy_output_value() (in module petitRADTRANS.retrieval.models) _normalize_model_output() (in module petitRADTRANS.retrieval.models) _normalize_optional_mapping() (in module petitRADTRANS.validation) _normalize_optional_mapping_or_scalar() (in module petitRADTRANS.validation) _normalize_optional_scalar() (in module petitRADTRANS.validation) _normalize_parameter_mapping() (in module petitRADTRANS.chemistry.core) _normalize_patchy_clouds() (petitRADTRANS.radtrans.Radtrans method) _normalize_weights() (petitRADTRANS.retrieval.sampler.DynestySampler static method) _normalized_categorical_entropy() (in module petitRADTRANS.sbi.flows.regularization) _ocp (petitRADTRANS.sbi.training.OrbaxCheckpointBackend attribute) _owns_dynesty_pool (petitRADTRANS.retrieval.sampler.DynestySampler attribute) _pad_to_fixed() (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder method) _pairwise_separations() (in module petitRADTRANS.retrieval.covariance) _parameter_layout (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform attribute) _parameter_layout_payload (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolPriorTransform attribute) _parameter_space_log_prob() (in module petitRADTRANS.sbi.flows.cube) _parameter_value_in_cgs() (in module petitRADTRANS.retrieval.models) _parameters() (petitRADTRANS.sbi.flows.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform method) _path2keeper_url() (in module petitRADTRANS.cli.prt_cli) _path_input_data (petitRADTRANS.radtrans.Radtrans attribute) _PATHOLOGICAL_CALIBRATION_COVERAGE_ERROR (in module petitRADTRANS.sbi.flows.regularization) _PATHOLOGICAL_INVERSE_FORWARD_MAX_ABS_ERROR (in module petitRADTRANS.sbi.flows.regularization) _phoenix_spec_dat2h5() (in module petitRADTRANS.opacities.file_conversion) _PHOENIX_STAR_TABLE (in module petitRADTRANS.stellar_spectra.phoenix) _plus_char (petitRADTRANS.opacities.opacities.Opacity attribute) _plus_symbol (petitRADTRANS.opacities.opacities.Opacity attribute) _posterior_summary_from_mapping() (petitRADTRANS.retrieval.sampler.Sampler static method) _posterior_summary_from_matrix() (petitRADTRANS.retrieval.sampler.Sampler static method) _PosteriorModel (class in petitRADTRANS.sbi.flows.objectives) _prepare_arrays() (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder method) _prepare_blackjax() (petitRADTRANS.retrieval.sampler.BlackJAXSampler class method) _prepare_ck_opacity_inputs() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _prepare_elemental_abundances() (in module petitRADTRANS.chemistry.clouds) _prepare_feautrier_system_lm_cpu() (in module petitRADTRANS.radtrans_core.linalg) _prepare_feautrier_system_lm_gpu() (in module petitRADTRANS.radtrans_core.linalg) _prepare_kernel_kwargs() (petitRADTRANS.retrieval.sampler.NumPyroSampler static method) _prepare_multiple_retrievals_plot() (in module petitRADTRANS.plotlib.plotlib) _prepare_numpyro() (petitRADTRANS.retrieval.sampler.NumPyroSampler class method) _pressures (petitRADTRANS.radtrans.Radtrans attribute) _print_log_likelihood_for_debugging (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _print_max_temperature_warning() (in module petitRADTRANS.stellar_spectra.phoenix) _print_min_temperature_warning() (in module petitRADTRANS.stellar_spectra.phoenix) _PRIOR_FINGERPRINT_CUBE_GRID (in module petitRADTRANS.sbi.task) _project_batched_rt_results() (petitRADTRANS.sbi.simulator.SimulationRuntime method) _project_dataset_observation() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) _raise_incomplete_wavelength_range() (in module petitRADTRANS.radtrans_core.spectrum_utils) _raise_small_size() (in module petitRADTRANS.radtrans_core.spectrum_utils) _rayleigh_species (petitRADTRANS.radtrans.Radtrans attribute) _rebin_opacities() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _rebin_wrap() (petitRADTRANS.spectral_model.SpectralModel static method) _refactor_input_data_folder() (in module petitRADTRANS.opacities.file_conversion) _register_sampler_results() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _REGISTERED (in module petitRADTRANS.radtrans_core.ck_mixing_ffi) _REGISTRATION_LOCK (in module petitRADTRANS.radtrans_core.ck_mixing_ffi) _REGULARIZATION_TAIL_FRACTION (in module petitRADTRANS.sbi.flows.regularization) _remove_checkpoint() (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _replace_isotope() (in module petitRADTRANS.chemistry.core) _reporthook() (in module petitRADTRANS.cli.prt_cli) _reporthook_sys_output() (in module petitRADTRANS.cli.prt_cli) _require_arviz() (in module petitRADTRANS.retrieval.sampler) _require_blackjax() (in module petitRADTRANS.retrieval.sampler) _require_dynesty() (in module petitRADTRANS.retrieval.sampler) _require_h5py() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetStore static method) (petitRADTRANS.sbi.HDF5SimulationDatasetStore static method) _require_jax() (in module petitRADTRANS.retrieval.sampler) _require_jax_local() (in module petitRADTRANS.retrieval.optimal_estimation) _require_jaxns() (in module petitRADTRANS.retrieval.sampler) _require_matplotlib_pyplot() (in module petitRADTRANS.retrieval.sampler) _require_numpyro() (in module petitRADTRANS.retrieval.sampler) _require_optax() (in module petitRADTRANS.retrieval.optimal_estimation) _require_pymultinest() (in module petitRADTRANS.retrieval.sampler) _require_ultranest() (in module petitRADTRANS.retrieval.sampler) _resolve_chemistry_mode() (in module petitRADTRANS.chemistry.core) _resolve_cloud_abundance() (in module petitRADTRANS.chemistry.core) _resolve_cloud_base_pressure() (in module petitRADTRANS.chemistry.core) _resolve_cloud_fsed() (in module petitRADTRANS.chemistry.core) _resolve_cloud_parameter_key() (in module petitRADTRANS.opacities.clouds) _resolve_estimator_config() (petitRADTRANS.sbi.ConditionalFlowPosterior static method) (petitRADTRANS.sbi.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior static method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior static method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior static method) _resolve_guillot_gamma() (in module petitRADTRANS.retrieval.models) _resolve_parameter_unit() (in module petitRADTRANS.retrieval.models) _resolve_preprocessing_metadata() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) _resolve_runtime_abundance_state() (in module petitRADTRANS.retrieval.models) _resolve_sampler_class() (in module petitRADTRANS.retrieval.retrieval) _resolve_solver_pressures() (petitRADTRANS.radtrans.Radtrans method) _resolve_ultranest_vectorized_mode() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _resolve_vectorized() (petitRADTRANS.retrieval.sampler.UltranestSampler class method) _restore_checkpoint() (petitRADTRANS.sbi.SBITrainer method) (petitRADTRANS.sbi.training.SBITrainer method) _retain_line_opacities_for_plotting (petitRADTRANS.radtrans.Radtrans attribute) _rng_key (petitRADTRANS.sbi.RuntimeSimulator attribute) (petitRADTRANS.sbi.simulator.RuntimeSimulator attribute) _robust_score_summary() (in module petitRADTRANS.sbi.inference) _row_invalid_value_mask() (petitRADTRANS.sbi.RuntimeSimulator static method) (petitRADTRANS.sbi.simulator.RuntimeSimulator static method) _run_batched_rt_kernel() (petitRADTRANS.sbi.simulator.SimulationRuntime method) _run_batched_rt_kernel_multi_device() (petitRADTRANS.sbi.simulator.SimulationRuntime method) _run_checkpointed_nuts() (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _run_one_chain_from_builder() (in module petitRADTRANS.retrieval.retrieval) _run_single_chain_on() (in module petitRADTRANS.retrieval.retrieval) _run_summary (petitRADTRANS.retrieval.sampler.DynestySampler attribute) _runtime (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _runtime_payload (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _sample_gaussian() (in module petitRADTRANS.retrieval.optimal_estimation) _sample_prior_parameter_batch() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _SAMPLER_CLASS_NAMES (in module petitRADTRANS.retrieval.retrieval) _SAMPLER_MODULE_NAMES (in module petitRADTRANS.retrieval.retrieval) _samples_mapping_to_matrix() (petitRADTRANS.retrieval.sampler.JAXNSSampler static method) _sanitize_emission_surface_inputs() (in module petitRADTRANS.validation) _sanitize_flux_opacity_inputs() (in module petitRADTRANS.validation) _sanitize_frequency_surface_input() (in module petitRADTRANS.validation) _save_checkpoint() (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.sbi.SBITrainer method) (petitRADTRANS.sbi.training.SBITrainer method) _save_equal_weight_samples() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _save_plot_figure() (petitRADTRANS.retrieval.sampler.Sampler class method) _save_results() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler method) (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) _save_samples_archive() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _scale_targets_from_observations() (in module petitRADTRANS.sbi.flows.objectives) _scattering_in_emission (petitRADTRANS.radtrans.Radtrans attribute) _score_dataset() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) _score_dataset_per_datapoint() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) _select_best_in_column() (petitRADTRANS.planet.Planet static method) _select_loaded_cloud_opacity_tables() (in module petitRADTRANS.opacities.clouds) _select_parameters() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader static method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader static method) _selected_clouds_have_effect() (in module petitRADTRANS.opacities.clouds) _SELECTION_PENALTY_CAP (in module petitRADTRANS.sbi.flows.regularization) _SELECTION_PENALTY_WEIGHT (in module petitRADTRANS.sbi.flows.regularization) _set_free_parameter_values() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) _set_sum_opacities() (petitRADTRANS.radtrans.Radtrans static method) _set_unstacked_line_opacity_debug_data() (petitRADTRANS.radtrans.Radtrans method) _setup_pres() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) _SHARED_PERIOD_KEY (in module petitRADTRANS.retrieval.models) _should_stop() (petitRADTRANS.sbi.SBITrainer method) (petitRADTRANS.sbi.training.SBITrainer method) _simplify_species_in_original_order() (in module petitRADTRANS.chemistry.core) _simulate_observations_batched_native() (petitRADTRANS.sbi.simulator.SimulationRuntime method) _simulate_parameter_matrix() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _SINUSOIDAL_REQUIRED_SUFFIXES (in module petitRADTRANS.retrieval.models) _SINUSOIDAL_SUFFIXES (in module petitRADTRANS.retrieval.models) _slice_batch_for_diagnostics() (in module petitRADTRANS.sbi.flows.regularization) _slice_batch_rows() (petitRADTRANS.sbi.RuntimeSimulator static method) (petitRADTRANS.sbi.simulator.RuntimeSimulator static method) _slice_observations_for_diagnostics() (in module petitRADTRANS.sbi.flows.regularization) _solar_elemental_abundances (in module petitRADTRANS.chemistry.utils) _solid_matter_state (petitRADTRANS.opacities.opacities.Opacity attribute) _solid_structure_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _solid_structures (petitRADTRANS.opacities.opacities.Opacity attribute) _solve_feautrier_system_lm_assoc() (in module petitRADTRANS.radtrans_core.linalg) _solve_feautrier_system_lm_cpu() (in module petitRADTRANS.radtrans_core.linalg) _solve_feautrier_system_lm_gpu() (in module petitRADTRANS.radtrans_core.linalg) _sort_pressure_temperature_grid() (in module petitRADTRANS.opacities.file_conversion) _source_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _space_group_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _spectral_information_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _spectral_sampling_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _spectral_sampling_types (petitRADTRANS.opacities.opacities.Opacity attribute) _spline_layer_regularization_terms() (in module petitRADTRANS.sbi.flows.regularization) _spline_parameter_statistics() (in module petitRADTRANS.sbi.flows.regularization) _spline_regularization_terms() (in module petitRADTRANS.sbi.flows.regularization) _split_cache (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) _split_counts (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter attribute) _stack_loaded_line_opacities() (petitRADTRANS.radtrans.Radtrans method) _stack_observation_payloads() (petitRADTRANS.sbi.RuntimeSimulator static method) (petitRADTRANS.sbi.simulator.RuntimeSimulator static method) _stack_runtime_cloud_base_pressures() (in module petitRADTRANS.retrieval.models) _stack_simulation_output_payloads() (in module petitRADTRANS.sbi.simulator) _standardize_cloud_species_parameter() (in module petitRADTRANS.opacities.clouds) _standardize_f_sed() (in module petitRADTRANS.opacities.clouds) _STAR_SPECTRUM_CACHE (in module petitRADTRANS.stellar_spectra.phoenix) _sum_opacities_emission (petitRADTRANS.radtrans.Radtrans attribute) _summarize_ncall() (petitRADTRANS.retrieval.sampler.DynestySampler static method) _summary_scalar() (petitRADTRANS.retrieval.sampler.Sampler static method) _synchronize() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) _temperature_grid_types (petitRADTRANS.opacities.opacities.Opacity attribute) _tile_prestacked_observation() (in module petitRADTRANS.sbi.flows.refinement) _TIME_INDEXED_PATTERN (in module petitRADTRANS.retrieval.models) _to_numpy_tree() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _to_serializable() (petitRADTRANS.retrieval.sampler.BlackJAXSampler static method) (petitRADTRANS.retrieval.sampler.NumPyroSampler static method) _total_absorption_opacity() (in module petitRADTRANS.opacities.optical_depths) _transform_parameter() (petitRADTRANS.retrieval.runtime.ParameterLayout method) _tree_flatten() (petitRADTRANS.radtrans.Radtrans method) (petitRADTRANS.retrieval.parameter.Parameter method) _tree_unflatten() (petitRADTRANS.radtrans.Radtrans class method) (petitRADTRANS.retrieval.parameter.Parameter class method) _uncertainties_mode (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _unclear_structure (petitRADTRANS.opacities.opacities.Opacity attribute) _unit_to_cgs_factor() (in module petitRADTRANS.retrieval.models) _UNROLL_SPECIES_LIMIT (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _UNSET (in module petitRADTRANS.retrieval.retrieval_config) (in module petitRADTRANS.validation) _upper_tail_average() (in module petitRADTRANS.sbi.flows.regularization) _use_ck_mixing_ffi() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) _USE_GPU (in module petitRADTRANS.radtrans_core.linalg) _use_jit (petitRADTRANS.retrieval.dynesty_pool_helpers.DynestyPoolLogLikelihood attribute) _validate_covariance_configuration() (petitRADTRANS.retrieval.data.Data method) _validate_free_parameter_count() (petitRADTRANS.retrieval.runtime.ParameterLayout method) _validate_missing_cloud_radius_arguments() (in module petitRADTRANS.opacities.clouds) _validate_observation_scale() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) _validate_power_law_inputs() (in module petitRADTRANS.opacities.clouds) _validate_selected_cloud_species() (in module petitRADTRANS.opacities.clouds) _validate_task_support() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) _validate_top_level_builder() (in module petitRADTRANS.retrieval.retrieval) _VALIDATION_CALIBRATION_DRAWS (in module petitRADTRANS.sbi.flows.regularization) _VALIDATION_DIAGNOSTIC_SAMPLES (in module petitRADTRANS.sbi.flows.regularization) _validation_diagnostics() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) _VMAP_FALLBACK_JAX_ERRORS (in module petitRADTRANS.retrieval.retrieval) _warn_partial_cloud_coverage_without_patchy_clouds() (in module petitRADTRANS.validation) _warn_scattering_in_emission_without_cloud_species() (in module petitRADTRANS.validation) _wavelength_range_pattern (petitRADTRANS.opacities.opacities.Opacity attribute) _wavelength_range_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _wavelength_separator (petitRADTRANS.opacities.opacities.Opacity attribute) _wavelength_units (petitRADTRANS.opacities.opacities.Opacity attribute) _weighted_average() (in module petitRADTRANS.sbi.flows.regularization) _wrap_runtime_temperature_builder() (in module petitRADTRANS.retrieval.models) _WRAPPED_LEGACY_MODEL_ATTRIBUTE (in module petitRADTRANS.retrieval.models) _write_entries() (petitRADTRANS.sbi.artifacts.FileArtifactRegistry method) _write_evidence_sidecar() (petitRADTRANS.retrieval.sampler.JAXNSSampler method) _write_manifest() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter method) _write_sampler_summary_section() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) A a_b_range() (in module petitRADTRANS.retrieval.utils) absolute_error (petitRADTRANS.sbi.calibration.CoverageLevelReport attribute) absolute_path (petitRADTRANS.opacities.opacities.Opacity attribute) AbstractObservationEncoder (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.observation) abundance_curvature_prior() (in module petitRADTRANS.chemistry.utils) ABUNDANCE_THRESHOLD (in module petitRADTRANS.radtrans_core.rayleigh_scattering) abundances (petitRADTRANS.retrieval.runtime.ModelInputs attribute) acceptance_rate (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) adaptive_feautrier_iterations (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) adaptive_mesh_refinement (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) (petitRADTRANS.retrieval.runtime.RetrievalRuntime attribute) add_blackbody_cpd_model() (in module petitRADTRANS.retrieval.models) add_cloud_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_data() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_filter_profile() (in module petitRADTRANS.synthetic_photometry) add_line_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_parameter() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_photometry() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_pressure_varying_line_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_time_series_data() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) add_vega() (in module petitRADTRANS.synthetic_photometry) additional_inputs (petitRADTRANS.retrieval.runtime.ModelInputs attribute) additional_log_likelihood (petitRADTRANS.retrieval.runtime.ModelResult attribute) aggregate() (petitRADTRANS.sbi.encoders.DatasetSetAggregator method) aggregate_local_sigma (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) aggregate_parameter_sensitivity_norm (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) aggregator (petitRADTRANS.sbi.encoders.ObservationEncoder attribute) (petitRADTRANS.sbi.ObservationEncoder attribute) algorithm (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) algorithm_factory (petitRADTRANS.retrieval.sampler.BlackJAXHMCSampler property) (petitRADTRANS.retrieval.sampler.BlackJAXNUTSSampler property) (petitRADTRANS.retrieval.sampler.BlackJAXSampler property) algorithm_name (petitRADTRANS.retrieval.sampler.BlackJAXHMCSampler property) (petitRADTRANS.retrieval.sampler.BlackJAXNUTSSampler property) (petitRADTRANS.retrieval.sampler.BlackJAXSampler property) (petitRADTRANS.retrieval.sampler.NumPyroHMCSampler property) (petitRADTRANS.retrieval.sampler.NumPyroNUTSSampler property) (petitRADTRANS.retrieval.sampler.NumPyroSampler property) ALL (petitRADTRANS.retrieval.multichain.ChainExecution attribute) all_succeeded (petitRADTRANS.retrieval.multichain.ProcessRunResult property) AmortizedRetrieval (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.inference) AmortizedRetrievalResult (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.inference) amplitude_projection (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) amu (in module petitRADTRANS.physical_constants) analyzer (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.PymultinestSampler attribute) anisotropic_cloud_scattering (petitRADTRANS.radtrans.Radtrans property) append() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter method) (petitRADTRANS.sbi.dataset.SimulationDatasetWriter method) apply_flux_scaling() (petitRADTRANS.retrieval.data.Data method) apply_ism_ext() (in module petitRADTRANS.physics) argument_of_periastron (petitRADTRANS.planet.Planet attribute) argument_of_periastron_error_lower (petitRADTRANS.planet.Planet attribute) argument_of_periastron_error_upper (petitRADTRANS.planet.Planet attribute) artifact_metadata (petitRADTRANS.sbi.dataset.GeneratedSimulationDataset attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) ArtifactMetadata (class in petitRADTRANS.sbi.artifacts) ArtifactRegistry (class in petitRADTRANS.sbi.artifacts) ArtifactRole (class in petitRADTRANS.sbi.artifacts) as_dict() (petitRADTRANS.retrieval.runtime.PhysicalParams method) as_legacy_dict() (petitRADTRANS.retrieval.runtime.PhysicalParams method) atm (in module petitRADTRANS.physical_constants) atmospheric_column_flux_mixer (petitRADTRANS.retrieval.data.TimeSeriesData attribute) atmospheric_column_fluxes (petitRADTRANS.retrieval.runtime.ModelResult attribute) attention_key (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) attention_query (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) attention_value (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) au (in module petitRADTRANS.physical_constants) AUTO (petitRADTRANS.retrieval.multichain.ChainExecution attribute) autoregressive_transform_units (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) aux_scale_loss_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) AUXILIARY (petitRADTRANS.sbi.observation.ObservationModality attribute) (petitRADTRANS.sbi.ObservationModality attribute) auxiliary_outputs (petitRADTRANS.retrieval.runtime.ModelResult attribute) available_fields (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) available_memory_gb() (in module petitRADTRANS.retrieval.multichain) az (in module petitRADTRANS.retrieval.sampler) B b_range() (in module petitRADTRANS.retrieval.utils) backend_output_subdir() (in module petitRADTRANS.retrieval.multichain) bar (in module petitRADTRANS.physical_constants) base_distribution (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) batch_embeddings() (in module petitRADTRANS.sbi.flows.objectives) batch_encode() (petitRADTRANS.sbi.AbstractObservationEncoder method) (petitRADTRANS.sbi.observation.AbstractObservationEncoder method) batch_encode_observation() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) batch_sample_posterior() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) batch_size (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) BatchedSimulator (class in petitRADTRANS.sbi.simulator) bayes_factor2sigma() (in module petitRADTRANS.math) BENCHMARK (petitRADTRANS.sbi.dataset.DatasetSplit attribute) (petitRADTRANS.sbi.DatasetSplit attribute) BENCHMARK_REPORT (petitRADTRANS.sbi.artifacts.ArtifactRole attribute) best_fit (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) best_fit_parameters (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) best_fit_spectra (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) best_logdensity (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) best_position (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) bias_pipeline_metric() (in module petitRADTRANS.retrieval.preparing) bin_down() (petitRADTRANS.opacities.correlated_k_binning.Ktable method) bin_down_corrk() (in module petitRADTRANS.opacities.correlated_k_binning) bin_species_exok() (in module petitRADTRANS.opacities.file_conversion) bjd_utc2bjd_tdb() (petitRADTRANS.planet.Planet static method) blackjax (in module petitRADTRANS.retrieval.sampler) BlackJAXHMCSampler (class in petitRADTRANS.retrieval.sampler) BlackJAXNUTSSampler (class in petitRADTRANS.retrieval.sampler) BlackJAXSampler (class in petitRADTRANS.retrieval.sampler) BlackJAXSamplingResults (class in petitRADTRANS.retrieval.sampler) block_projection (petitRADTRANS.sbi.encoders.DatasetSetAggregator attribute) BlockNormalizationStats (class in petitRADTRANS.sbi.preprocessing) blocks (petitRADTRANS.sbi.preprocessing.TaskPreprocessingMetadata attribute) (petitRADTRANS.sbi.TaskPreprocessingMetadata attribute) bnpe_balance_loss_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) bond_albedo (petitRADTRANS.planet.Planet attribute) bond_albedo_error_lower (petitRADTRANS.planet.Planet attribute) bond_albedo_error_upper (petitRADTRANS.planet.Planet attribute) bound (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) box_car_conv() (in module petitRADTRANS.math) broadcast_spectrum_to_mask() (in module petitRADTRANS.retrieval.utils) build() (petitRADTRANS.retrieval.multichain.ChainSpec class method) build_abundance_profile() (in module petitRADTRANS.chemistry.utils) build_adaptive_pressure_grid() (in module petitRADTRANS.chemistry.utils) build_and_lock() (petitRADTRANS.utils.LockedDict class method) build_artifact_metadata() (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) build_ck_combination_state() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) build_conditional_flow_posterior() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.config) build_global_covariance_kernel() (in module petitRADTRANS.retrieval.covariance) build_legacy_parameter_dict() (petitRADTRANS.retrieval.runtime.ParameterLayout method) build_local_covariance_kernel() (in module petitRADTRANS.retrieval.covariance) build_observation_block() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.observation) build_observation_block_batch() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.observation) build_observation_blocks_from_sample() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.observation) build_observation_states() (petitRADTRANS.sbi.SBITask method) (petitRADTRANS.sbi.task.SBITask method) build_optimizer() (in module petitRADTRANS.retrieval.optimal_estimation) build_param_dict() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) build_raw_observation_blocks() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.observation) build_run_label() (in module petitRADTRANS.sbi.artifacts) build_runtime() (petitRADTRANS.sbi.SBITask method) (petitRADTRANS.sbi.task.SBITask method) bval (petitRADTRANS.retrieval.data.Data attribute) C c (in module petitRADTRANS.physical_constants) calc_zero_point() (petitRADTRANS.synthetic_photometry.SyntheticPhotometry method) calculate_airmass() (petitRADTRANS.planet.Planet method) calculate_barycentric_velocities() (petitRADTRANS.planet.Planet method) calculate_ck_emission_contribution() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) calculate_cloud_base_pressure() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_al2o3() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_al2o3_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_caal12o19() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_caal12o19_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_catio3() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_catio3_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_ch4() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_ch4_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_cr() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_cr_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_fe() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_fe_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_h2o() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_h2o_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_kcl() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_kcl_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mg2sio4() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mg2sio4_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mgsio3() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mgsio3_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mns() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_mns_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_na2s() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_na2s_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_nh3() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_nh3_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_sio() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_sio2() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_sio2_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_sio_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_tio2() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_tio2_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_zns() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_base_pressure_zns_free() (in module petitRADTRANS.chemistry.clouds) calculate_cloud_mass_fractions() (in module petitRADTRANS.chemistry.core) calculate_co_added_ccf_snr() (in module petitRADTRANS.ccf.ccf) calculate_contribution_spectra() (petitRADTRANS.radtrans.Radtrans method) (petitRADTRANS.spectral_model.SpectralModel method) calculate_distance_from_luminosity() (in module petitRADTRANS.physics) calculate_emission_spectra_batched() (in module petitRADTRANS.retrieval.models) calculate_emission_spectrum() (in module petitRADTRANS.retrieval.models) (petitRADTRANS.spectral_model.SpectralModel method) calculate_emission_spectrum_runtime() (in module petitRADTRANS.retrieval.models) calculate_equilibrium_temperature() (petitRADTRANS.planet.Planet method) calculate_flux() (petitRADTRANS.radtrans.Radtrans method) calculate_flux_autodiff() (petitRADTRANS.radtrans.Radtrans method) calculate_forward_model() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) calculate_full_transit_duration() (petitRADTRANS.planet.Planet method) calculate_gas_mass_fractions() (in module petitRADTRANS.chemistry.core) calculate_impact_parameter() (petitRADTRANS.planet.Planet method) calculate_intrinsic_temperature() (petitRADTRANS.planet.Planet method) calculate_intrinsic_temperature_inflated() (petitRADTRANS.planet.Planet method) calculate_intrinsic_temperature_leconte() (petitRADTRANS.planet.Planet method) calculate_log_likelihood() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) calculate_mass_fraction_al2o3() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_caal12o19() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_catio3() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_ch4() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_cr() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_fe() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_h2o() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_kcl() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_mg2sio4() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_mgsio3() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_mns() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_na2s() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_nh3() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_sio() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_sio2() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_tio2() (in module petitRADTRANS.chemistry.clouds) calculate_mass_fraction_zns() (in module petitRADTRANS.chemistry.clouds) calculate_mid_transit_time() (petitRADTRANS.planet.Planet method) calculate_optimal_wavelength_boundaries() (petitRADTRANS.spectral_model.SpectralModel method) calculate_orbital_longitudes() (petitRADTRANS.planet.Planet method) calculate_orbital_phases() (petitRADTRANS.planet.Planet method) calculate_orbital_velocity() (petitRADTRANS.planet.Planet method) calculate_photosphere_radius() (petitRADTRANS.radtrans.Radtrans method) calculate_radial_velocity() (petitRADTRANS.planet.Planet method) calculate_radial_velocity_semi_amplitude() (petitRADTRANS.planet.Planet method) calculate_rosseland_planck_opacities() (petitRADTRANS.radtrans.Radtrans method) calculate_spectral_parameters() (petitRADTRANS.spectral_model.SpectralModel method) calculate_spectrum() (petitRADTRANS.spectral_model.SpectralModel method) calculate_temperature_profile() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) calculate_transit_radii() (petitRADTRANS.radtrans.Radtrans method) calculate_transit_radii_autodiff() (petitRADTRANS.radtrans.Radtrans method) calculate_transmission_spectrum() (in module petitRADTRANS.retrieval.models) (petitRADTRANS.spectral_model.SpectralModel method) calculate_transmission_spectrum_runtime() (in module petitRADTRANS.retrieval.models) calculate_uncertainty() (in module petitRADTRANS.math) calculate_vapour_pressure() (in module petitRADTRANS.chemistry.clouds) calibration_coverage_error (petitRADTRANS.sbi.config.StabilityConfig attribute) (petitRADTRANS.sbi.StabilityConfig attribute) CALIBRATION_REPORT (petitRADTRANS.sbi.artifacts.ArtifactRole attribute) call_etc() (in module petitRADTRANS.cli.eso_etc_cli) category (petitRADTRANS.opacities.opacities.Opacity attribute) ccf_analysis() (in module petitRADTRANS.ccf.ccf) central_credible_interval() (in module petitRADTRANS.sbi.calibration) ch4_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) chain_artifact_path() (in module petitRADTRANS.retrieval.multichain) chain_id (petitRADTRANS.retrieval.multichain.ChainSpec attribute) (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) chain_index (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) chain_retrieval_name() (in module petitRADTRANS.retrieval.multichain) ChainExecution (class in petitRADTRANS.retrieval.multichain) ChainSpec (class in petitRADTRANS.retrieval.multichain) channels (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) charge (petitRADTRANS.opacities.opacities.Opacity attribute) check_all_close() (in module petitRADTRANS.utils) check_name() (petitRADTRANS.opacities.opacities.Opacity class method) check_observation_in_training_range() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.validation) checkpoint_backend (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.SBITrainer attribute) (petitRADTRANS.sbi.training.SBITrainer attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) checkpoint_directory (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.SBITrainer attribute) (petitRADTRANS.sbi.training.SBITrainer attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) CheckpointBackend (class in petitRADTRANS.sbi.training) chi2 (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) cholesky_factor (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) chunk_feautrier (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) chunk_size (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetStore attribute) (petitRADTRANS.sbi.HDF5SimulationDatasetStore attribute) CIAOpacity (class in petitRADTRANS.opacities) (class in petitRADTRANS.opacities.opacities) cias_loaded_opacities (petitRADTRANS.radtrans.Radtrans property) class2hdf5() (in module petitRADTRANS.utils) class_init_args2class_args() (in module petitRADTRANS.utils) class_init_args2dict() (in module petitRADTRANS.utils) classify_posterior_informativeness() (in module petitRADTRANS.sbi) clear_caches (in module petitRADTRANS.retrieval.sampler) cloud_dict() (in module petitRADTRANS.chemistry.clouds) cloud_f_sed (petitRADTRANS.retrieval.runtime.ModelInputs attribute) cloud_fraction (petitRADTRANS.retrieval.runtime.ModelInputs attribute) cloud_hansen_b (petitRADTRANS.retrieval.runtime.ModelInputs attribute) cloud_particle_mean_radii (petitRADTRANS.retrieval.runtime.ModelInputs attribute) cloud_particle_radius_distribution (petitRADTRANS.retrieval.runtime.ModelInputs attribute) cloud_species (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) CloudOpacity (class in petitRADTRANS.opacities) (class in petitRADTRANS.opacities.opacities) clouds_loaded_opacities (petitRADTRANS.radtrans.Radtrans property) co2_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) co_add_cross_correlation() (in module petitRADTRANS.ccf.ccf_core) co_ratios (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) co_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) coerce_model_generating_function() (in module petitRADTRANS.retrieval.models) collapse() (in module petitRADTRANS.cli.eso_etc_cli) combine() (petitRADTRANS.retrieval.multichain.MCMCChainCombiner method) (petitRADTRANS.retrieval.multichain.NestedChainCombiner method) combine_chains() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) combine_chains_from_builder() (petitRADTRANS.retrieval.Retrieval class method) (petitRADTRANS.retrieval.retrieval.Retrieval class method) combine_ck_mixing_ffi() (in module petitRADTRANS.radtrans_core.ck_mixing_ffi) combine_ck_opacities() (in module petitRADTRANS.opacities.continuum) (in module petitRADTRANS.radtrans_core.radiative_transfer_core) combine_evidence() (in module petitRADTRANS.retrieval.multichain) combine_mcmc_chains() (in module petitRADTRANS.retrieval.multichain) combine_nested_chains() (in module petitRADTRANS.retrieval.multichain) combine_opacities() (in module petitRADTRANS.opacities.continuum) combined_retrieval_name() (in module petitRADTRANS.retrieval.multichain) CombinedMCMC (class in petitRADTRANS.retrieval.multichain) CombinedNested (class in petitRADTRANS.retrieval.multichain) comm (in module petitRADTRANS.opacities.opacities) (in module petitRADTRANS.retrieval._mpi) compare_named_mappings() (in module petitRADTRANS.sbi.compatibility) CompatibilityReport (class in petitRADTRANS.sbi.compatibility) compute_airmass() (petitRADTRANS.planet.Planet static method) compute_barycentric_velocities() (petitRADTRANS.planet.Planet static method) compute_bins_edges() (in module petitRADTRANS.radtrans_core.spectrum_utils) compute_bins_resolving_power() (petitRADTRANS.spectral_model.SpectralModel static method) compute_block_normalization_stats() (in module petitRADTRANS.sbi.preprocessing) compute_cia_opacities() (in module petitRADTRANS.opacities.cia) compute_ck_flux() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_cloud_continuum_opacities() (in module petitRADTRANS.opacities.clouds) compute_cloud_f_sed() (petitRADTRANS.spectral_model.SpectralModel static method) compute_cloud_hansen_a() (petitRADTRANS.spectral_model.SpectralModel static method) compute_cloud_hansen_b() (petitRADTRANS.spectral_model.SpectralModel static method) compute_cloud_hansen_opacities() (in module petitRADTRANS.radtrans_core.cloud_core) compute_cloud_log_normal_particle_distribution_opacities() (in module petitRADTRANS.radtrans_core.cloud_core) compute_cloud_log_normal_particle_distribution_opacities_grid() (in module petitRADTRANS.radtrans_core.cloud_core) compute_cloud_particle_mean_radii() (petitRADTRANS.spectral_model.SpectralModel static method) compute_cloud_particle_mean_radius() (in module petitRADTRANS.radtrans_core.cloud_core) compute_cloud_particle_mean_radius_hansen() (in module petitRADTRANS.radtrans_core.cloud_core) compute_cloud_particle_radius_distribution_std() (petitRADTRANS.spectral_model.SpectralModel static method) compute_cloud_photosphere_median_optical_depth() (petitRADTRANS.spectral_model.SpectralModel static method) compute_clouds_particle_porosity_factor() (petitRADTRANS.spectral_model.SpectralModel static method) compute_combined_opacities() (in module petitRADTRANS.opacities.continuum) compute_complete_coverage_clouds() (petitRADTRANS.spectral_model.SpectralModel static method) compute_continuum_opacities() (in module petitRADTRANS.opacities.continuum) compute_continuum_scattering_opacities() (in module petitRADTRANS.opacities.continuum) compute_eddy_diffusion_coefficients() (petitRADTRANS.spectral_model.SpectralModel static method) compute_effective_temperature() (in module petitRADTRANS.physics) compute_emissivities() (petitRADTRANS.spectral_model.SpectralModel static method) compute_equilibrium_mass_fractions() (petitRADTRANS.spectral_model.SpectralModel static method) compute_equilibrium_temperature() (petitRADTRANS.planet.Planet static method) compute_feautrier_chunk_size() (petitRADTRANS.spectral_model.SpectralModel static method) compute_feautrier_radiative_transfer() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_full_transit_duration() (petitRADTRANS.planet.Planet static method) compute_gray_opacity() (petitRADTRANS.spectral_model.SpectralModel static method) compute_h_minus_bound_free_xsec() (in module petitRADTRANS.opacities.hminus) compute_h_minus_free_free_xsec() (in module petitRADTRANS.opacities.hminus) compute_h_minus_opacities() (in module petitRADTRANS.opacities.hminus) compute_haze_factor() (petitRADTRANS.spectral_model.SpectralModel static method) compute_hydrostatic_interval_integrals() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_impact_parameter() (petitRADTRANS.planet.Planet static method) compute_intrinsic_temperature() (petitRADTRANS.planet.Planet static method) compute_intrinsic_temperature_inflated() (petitRADTRANS.planet.Planet static method) compute_intrinsic_temperature_leconte() (petitRADTRANS.planet.Planet static method) compute_log_likelihood_for_spectrum() (in module petitRADTRANS.retrieval.utils) compute_loss() (in module petitRADTRANS.sbi.flows.objectives) compute_mass_fractions() (petitRADTRANS.spectral_model.SpectralModel static method) compute_mcmc_diagnostics() (in module petitRADTRANS.retrieval.multichain) compute_mean_molar_masses() (in module petitRADTRANS.chemistry.utils) (petitRADTRANS.spectral_model.SpectralModel static method) compute_mean_molar_masses_from_volume_mixing_ratios() (in module petitRADTRANS.chemistry.utils) compute_metallicity() (petitRADTRANS.spectral_model.SpectralModel static method) compute_mid_transit_time_from_source() (petitRADTRANS.planet.Planet static method) compute_non_cia_gas_induced_continuum_opacities() (in module petitRADTRANS.opacities.hminus) compute_opaque_cloud_top_pressure() (petitRADTRANS.spectral_model.SpectralModel static method) compute_optical_depths() (in module petitRADTRANS.opacities.optical_depths) (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_optical_depths_with_photospheric_cloud() (in module petitRADTRANS.opacities.optical_depths) compute_optimal_wavelength_boundaries() (petitRADTRANS.spectral_model.SpectralModel static method) compute_orbit_semi_major_axis() (petitRADTRANS.spectral_model.SpectralModel static method) compute_orbital_longitudes() (petitRADTRANS.planet.Planet static method) (petitRADTRANS.spectral_model.SpectralModel static method) compute_orbital_phases() (petitRADTRANS.planet.Planet static method) compute_orbital_velocity() (petitRADTRANS.planet.Planet static method) compute_photon_destruction_prob() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_planck_function() (in module petitRADTRANS.radtrans_core.physics_core) compute_planck_function_integral() (in module petitRADTRANS.radtrans_core.physics_core) compute_planck_function_temperature_derivative() (in module petitRADTRANS.radtrans_core.physics_core) compute_planck_opacities() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_planck_opacities_core() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_planet_radius() (petitRADTRANS.spectral_model.SpectralModel static method) compute_power_law_opacities() (in module petitRADTRANS.opacities.rayleigh) compute_power_law_opacity_350nm() (petitRADTRANS.spectral_model.SpectralModel static method) compute_power_law_opacity_coefficient() (petitRADTRANS.spectral_model.SpectralModel static method) compute_pressure_hydrostatic_equilibrium() (in module petitRADTRANS.radtrans_core.physics_core) compute_pressure_nodes() (in module petitRADTRANS.chemistry.utils) compute_radial_velocities() (petitRADTRANS.spectral_model.SpectralModel static method) compute_radial_velocity() (petitRADTRANS.planet.Planet static method) compute_radial_velocity_semi_amplitude() (petitRADTRANS.planet.Planet static method) (petitRADTRANS.spectral_model.SpectralModel static method) compute_radius_hydrostatic_equilibrium() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_rayleigh_scattering() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) compute_rayleigh_scattering_opacities() (in module petitRADTRANS.opacities.rayleigh) compute_reference_gravity() (petitRADTRANS.spectral_model.SpectralModel static method) compute_reference_pressure() (petitRADTRANS.spectral_model.SpectralModel static method) compute_reflectances() (petitRADTRANS.spectral_model.SpectralModel static method) compute_relative_velocities() (petitRADTRANS.spectral_model.SpectralModel static method) compute_resolving_power() (in module petitRADTRANS.math) compute_rosseland_opacities() (in module petitRADTRANS.opacities.rosseland) (in module petitRADTRANS.radtrans_core.physics_core) compute_rosseland_opacities_core() (in module petitRADTRANS.radtrans_core.physics_core) compute_run_config_hash() (in module petitRADTRANS.sbi.artifacts) compute_scaled_metallicity() (petitRADTRANS.spectral_model.SpectralModel static method) compute_species_optical_depths() (in module petitRADTRANS.opacities.clouds) (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_spectral_parameters() (petitRADTRANS.spectral_model.SpectralModel static method) compute_spectrum() (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable method) compute_star_effective_temperature() (petitRADTRANS.spectral_model.SpectralModel static method) compute_star_flux() (petitRADTRANS.spectral_model.SpectralModel static method) compute_star_irradiation_angle() (petitRADTRANS.spectral_model.SpectralModel static method) compute_star_radius() (petitRADTRANS.spectral_model.SpectralModel static method) compute_star_spectrum() (in module petitRADTRANS.stellar_spectra.phoenix) compute_stellar_intensities() (petitRADTRANS.spectral_model.SpectralModel static method) compute_temperatures() (petitRADTRANS.spectral_model.SpectralModel static method) compute_transit_duration() (petitRADTRANS.spectral_model.SpectralModel static method) compute_transit_fractional_light_loss() (petitRADTRANS.spectral_model.SpectralModel static method) compute_transit_radii() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_transit_radii_fortran() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_transit_radii_summed() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_transmission_spectrum_contribution() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) compute_turbulent_settling_speed() (in module petitRADTRANS.radtrans_core.cloud_core) compute_validation_diagnostics() (in module petitRADTRANS.sbi.flows.objectives) compute_velocity_range() (petitRADTRANS.spectral_model.SpectralModel static method) concatenate_flux_epochs_variability (petitRADTRANS.retrieval.data.TimeSeriesData attribute) condensation_temperature_al2o3() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_al2o3_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_caal12o19() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_caal12o19_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_catio3() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_catio3_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_ch4() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_ch4_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_cr() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_cr_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe_comb_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe_combined() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe_l_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_fe_liquid() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_h2o() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_h2o_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_kcl() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_kcl_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mg2sio4() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mg2sio4_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mgsio3() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mgsio3_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mns() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_mns_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_na2s() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_na2s_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_nh3() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_nh3_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_sio() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_sio2() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_sio2_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_sio_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_tio2() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_tio2_free() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_zns() (in module petitRADTRANS.chemistry.clouds) condensation_temperature_zns_free() (in module petitRADTRANS.chemistry.clouds) condition_number (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) ConditionalAffineCoupling (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalAffineFlow (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalAutoregressiveAffineTransform (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalAutoregressiveFlow (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalAutoregressiveFlowPosterior (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.posterior) ConditionalFlowPosterior (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.posterior) ConditionalNeuralAutoregressiveFlow (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalNeuralAutoregressiveFlowPosterior (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.posterior) ConditionalNeuralAutoregressiveTransform (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalRationalQuadraticSplineCoupling (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalScalarSplineTransform (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalSplineFlow (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) ConditionalSplineFlowPosterior (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.posterior) conditioner (petitRADTRANS.sbi.flows.ConditionalAffineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) conditioner_depth (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) conditioners (petitRADTRANS.sbi.flows.ConditionalAutoregressiveAffineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveAffineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) config (petitRADTRANS.sbi.SBITrainer attribute) (petitRADTRANS.sbi.training.SBITrainer attribute) config_file (petitRADTRANS.config.configuration.PetitradtransConfigParser property) configuration (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) confirmation_status (petitRADTRANS.planet.Planet attribute) context_dim (petitRADTRANS.sbi.flows.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.CouplingConditioner attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.CouplingConditioner attribute) continuum_clouds_opacities_dat2h5() (in module petitRADTRANS.opacities.file_conversion) continuum_clouds_opacities_dat2h5_external_species() (in module petitRADTRANS.opacities.file_conversion) continuum_opacities (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) continuum_subtract_spectrum() (in module petitRADTRANS.radtrans_core.spectrum_utils) contour_corner() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) contraction (petitRADTRANS.sbi.PosteriorInformativenessReport attribute) converged (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) converged_fraction (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) convert_all() (in module petitRADTRANS.opacities.file_conversion) convert_kdata_unit() (petitRADTRANS.opacities.correlated_k_binning.Data_table method) convert_p_unit() (petitRADTRANS.opacities.correlated_k_binning.Data_table method) convolve() (in module petitRADTRANS.radtrans_core.spectrum_utils) (petitRADTRANS.spectral_model.SpectralModel static method) convolve_and_sample_variable_resolution_breads() (in module petitRADTRANS.radtrans_core.spectrum_utils) convolve_constant_resolution() (in module petitRADTRANS.radtrans_core.spectrum_utils) convolve_variable_resolution() (in module petitRADTRANS.radtrans_core.spectrum_utils) coordinate_mean (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) coordinate_std (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) coordinates (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) copy_array_like() (in module petitRADTRANS.utils) copy_mask_array() (in module petitRADTRANS.utils) copy_parameter_value() (in module petitRADTRANS.utils) corner_files (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) corner_label (petitRADTRANS.retrieval.parameter.Parameter attribute) corner_ranges (petitRADTRANS.retrieval.parameter.Parameter attribute) corner_transform (petitRADTRANS.retrieval.parameter.Parameter attribute) CorrelatedKOpacity (class in petitRADTRANS.opacities) (class in petitRADTRANS.opacities.opacities) count_predictive_case_checkpoints() (in module petitRADTRANS.sbi.artifacts) CouplingConditioner (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) covariance (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) covariance_cholesky_factor (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) covariance_is_positive_definite (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) covariance_jitter (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) covariance_mode (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) CoverageLevelReport (class in petitRADTRANS.sbi.calibration) coverages (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) create_writer() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetStore method) (petitRADTRANS.sbi.dataset.SimulationDatasetStore method) (petitRADTRANS.sbi.HDF5SimulationDatasetStore method) (petitRADTRANS.sbi.SimulationDatasetStore method) cross_correlate() (in module petitRADTRANS.ccf.ccf_core) cross_correlate_data_model() (in module petitRADTRANS.ccf.ccf) cross_correlate_matrices() (in module petitRADTRANS.ccf.ccf_core) crps (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) CST_PI (in module petitRADTRANS.radtrans_core.radiative_transfer_core) cube_edge_hit_rate (petitRADTRANS.sbi.config.StabilityConfig attribute) (petitRADTRANS.sbi.StabilityConfig attribute) cube_epsilon (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) cube_from_unconstrained() (petitRADTRANS.retrieval.runtime.ParameterLayout method) cube_from_unconstrained_batch() (petitRADTRANS.retrieval.runtime.ParameterLayout method) cube_parameters (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) cubic_spline_profile() (in module petitRADTRANS.chemistry.utils) cubic_spline_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.spline) D Data (class in petitRADTRANS.retrieval.data) data (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) data_covariance (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) data_folder (petitRADTRANS.synthetic_photometry.ReadFilter attribute) (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) data_parallel (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) data_resolution (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) data_resolution_array_model (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) data_spectrum (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) Data_table (class in petitRADTRANS.opacities.correlated_k_binning) data_uncertainties (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) database (petitRADTRANS.synthetic_photometry.ReadFilter attribute) (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) dataset (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) dataset2obj() (in module petitRADTRANS.utils) dataset_names (petitRADTRANS.sbi.ObservationSchema attribute) (petitRADTRANS.sbi.task.ObservationSchema attribute) DatasetSetAggregator (class in petitRADTRANS.sbi.encoders) DatasetSplit (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.dataset) Date_ID (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) dec (petitRADTRANS.planet.Planet attribute) DEFAULT_BREADS_FILTER_SIZE (in module petitRADTRANS.radtrans_core.spectrum_utils) default_color (in module petitRADTRANS.plotlib.style) default_config (petitRADTRANS.config.configuration.PetitradtransConfigParser property) default_device (in module petitRADTRANS.retrieval.sampler) default_file_selection() (in module petitRADTRANS._input_data) define_abundance_node_list() (in module petitRADTRANS.chemistry.utils) define_pressure_node_list() (in module petitRADTRANS.chemistry.utils) delta_prior() (in module petitRADTRANS.retrieval.utils) density (petitRADTRANS.planet.Planet attribute) density_error_lower (petitRADTRANS.planet.Planet attribute) density_error_upper (petitRADTRANS.planet.Planet attribute) derive_chain_seed() (in module petitRADTRANS.retrieval.multichain) det_type (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) detector_type() (petitRADTRANS.synthetic_photometry.ReadFilter method) device_get (in module petitRADTRANS.retrieval.sampler) devices (in module petitRADTRANS.retrieval.sampler) diagnose_domain() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) diagnostics (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) (petitRADTRANS.retrieval.multichain.CombinedNested attribute) (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) diagnostics_output_directory (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) diagnostics_plot_interval (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) dict2hdf5() (in module petitRADTRANS.utils) digest (petitRADTRANS.sbi.compatibility.TaskFingerprint attribute) dilated_convs (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) directory (petitRADTRANS.config.configuration.PetitradtransConfigParser property) discovery_method (petitRADTRANS.planet.Planet attribute) discovery_reference (petitRADTRANS.planet.Planet attribute) discovery_year (petitRADTRANS.planet.Planet attribute) disk_blackbody_temperature (petitRADTRANS.retrieval.runtime.ModelInputs attribute) disk_radius (petitRADTRANS.retrieval.runtime.ModelInputs attribute) distance_to_system (petitRADTRANS.retrieval.runtime.ModelInputs attribute) distribution (petitRADTRANS.retrieval.parameter.Parameter attribute) dll_directories (in module petitRADTRANS) DOI (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) doppler_shift() (in module petitRADTRANS.physics) download_filter() (in module petitRADTRANS.synthetic_photometry) download_from_nasa_exoplanet_archive() (petitRADTRANS.planet.Planet static method) download_input_data() (in module petitRADTRANS.cli.prt_cli) download_planet_from_nasa_exoplanet_archive() (petitRADTRANS.planet.Planet static method) download_snr_data() (in module petitRADTRANS.cli.eso_etc_cli) dyfunc (in module petitRADTRANS.retrieval.sampler) dynamic_names (petitRADTRANS.retrieval.runtime.PhysicalParams attribute) dynamic_values (petitRADTRANS.retrieval.runtime.PhysicalParams attribute) DynamicNestedSampler (in module petitRADTRANS.retrieval.sampler) dynesty (in module petitRADTRANS.retrieval.sampler) DynestyPool (in module petitRADTRANS.retrieval.sampler) DynestyPoolLogLikelihood (class in petitRADTRANS.retrieval.dynesty_pool_helpers) DynestyPoolPriorTransform (class in petitRADTRANS.retrieval.dynesty_pool_helpers) DynestySampler (class in petitRADTRANS.retrieval.sampler) dyplot (in module petitRADTRANS.retrieval.sampler) E e (in module petitRADTRANS.physical_constants) e_molar_mass (in module petitRADTRANS.physical_constants) early_stopping (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) early_stopping_min_delta (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) early_stopping_patience (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) EarlyStoppingConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.training) eddy_diffusion_coefficients (petitRADTRANS.retrieval.runtime.ModelInputs attribute) effective_flow_family (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) effective_rank (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) effective_wavelength() (petitRADTRANS.synthetic_photometry.ReadFilter method) effective_width() (petitRADTRANS.synthetic_photometry.ReadFilter method) elbo_anneal_fraction (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) elbo_beta_anneal_fraction (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) elbo_beta_end (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) elbo_beta_start (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) elbo_learning_rate (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) elbo_num_samples (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.RefinementConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) elbo_num_steps (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) element_number2element_symbol() (in module petitRADTRANS.chemistry.prt_molmass) element_symbol2element_number() (in module petitRADTRANS.chemistry.prt_molmass) embedding (petitRADTRANS.sbi.observation.EncodedObservation attribute) embedding_dim (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.EncoderConfig attribute) (petitRADTRANS.sbi.EncoderConfig attribute) (petitRADTRANS.sbi.encoders.DatasetSetAggregator attribute) (petitRADTRANS.sbi.encoders.ObservationEncoder attribute) (petitRADTRANS.sbi.encoders.PhotometryPointEncoder attribute) (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.ObservationEncoder attribute) (petitRADTRANS.sbi.PhotometryPointEncoder attribute) emission_angle_grid (petitRADTRANS.radtrans.Radtrans property) empirical_coverage (petitRADTRANS.sbi.calibration.CoverageLevelReport attribute) empirical_interval_coverage() (in module petitRADTRANS.sbi.calibration) encode() (petitRADTRANS.sbi.AbstractObservationEncoder method) (petitRADTRANS.sbi.encoders.ObservationEncoder method) (petitRADTRANS.sbi.observation.AbstractObservationEncoder method) (petitRADTRANS.sbi.ObservationEncoder method) encode_block() (petitRADTRANS.sbi.encoders.PhotometryPointEncoder method) (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder method) (petitRADTRANS.sbi.PhotometryPointEncoder method) encode_from_prestacked() (petitRADTRANS.sbi.encoders.ObservationEncoder method) (petitRADTRANS.sbi.ObservationEncoder method) encode_observation() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.PosteriorEstimator method) (petitRADTRANS.sbi.PosteriorEstimator method) encode_stacked_batch() (petitRADTRANS.sbi.encoders.ObservationEncoder method) (petitRADTRANS.sbi.ObservationEncoder method) EncodedObservation (class in petitRADTRANS.sbi.observation) encoder (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.SBIConfig attribute) encoder_hidden_dim (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) EncoderConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) ensure_ck_mixing_ffi_registered() (in module petitRADTRANS.radtrans_core.ck_mixing_ffi) ensure_jax_array() (in module petitRADTRANS.retrieval.utils) epoch_of_periastron (petitRADTRANS.planet.Planet attribute) epoch_of_periastron_error_lower (petitRADTRANS.planet.Planet attribute) epoch_of_periastron_error_upper (petitRADTRANS.planet.Planet attribute) equilibrium_temperature (petitRADTRANS.planet.Planet attribute) equilibrium_temperature_error_lower (petitRADTRANS.planet.Planet attribute) equilibrium_temperature_error_upper (petitRADTRANS.planet.Planet attribute) EquinoxCheckpointBackend (class in petitRADTRANS.sbi.training) ess (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) estimate_peak_memory_gb() (in module petitRADTRANS.retrieval.multichain) estimate_preloaded_split_memory_gib() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.dataset) estimator_family (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) evaluate_jax() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) evaluate_jax_batched() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) evaluate_per_datapoint_jax() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) evaluate_sample_spectra (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) evaluate_scalar() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) evaluate_vectorized_jax() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) evidence (petitRADTRANS.retrieval.multichain.CombinedNested attribute) existing_chain_ids() (in module petitRADTRANS.retrieval.multichain) exo_k_multiple_rebin() (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) exo_k_multiple_rebin_from_species() (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) exo_k_rebin() (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) expected (petitRADTRANS.sbi.compatibility.CompatibilityReport attribute) extension (petitRADTRANS.opacities.opacities.Opacity attribute) external_radtrans_reference (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) extract_spectrum_parameters() (in module petitRADTRANS.retrieval.utils) F failed (petitRADTRANS.retrieval.multichain.ProcessRunResult attribute) fair_share() (in module petitRADTRANS.slurm_runs.utils) family (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) feature_scaling() (in module petitRADTRANS.math) feautrier_chunk_size (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) FEAUTRIER_JAX_DTYPE (in module petitRADTRANS.jax_dtype), [1] file_name (petitRADTRANS.opacities.opacities.Opacity attribute) FileArtifactRegistry (class in petitRADTRANS.sbi.artifacts) filename (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) (petitRADTRANS.opacities.correlated_k_binning.Ktable attribute) filename_list (petitRADTRANS.retrieval.data.TimeSeriesData attribute) fill_atmosphere() (in module petitRADTRANS.chemistry.utils) fill_object() (in module petitRADTRANS.utils) filter_fwhm() (petitRADTRANS.synthetic_photometry.ReadFilter method) filter_interp (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) filter_name (petitRADTRANS.synthetic_photometry.ReadFilter attribute) (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) filter_spectrum_with_spline() (in module petitRADTRANS.radtrans_core.spectrum_utils) finalize() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetWriter method) (petitRADTRANS.sbi.dataset.SimulationDatasetWriter method) finalize_init() (petitRADTRANS.opacities.correlated_k_binning.Data_table method) find() (petitRADTRANS.opacities.CIAOpacity class method) (petitRADTRANS.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.CIAOpacity class method) (petitRADTRANS.opacities.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.Opacity class method) find_input_file() (in module petitRADTRANS._input_data) find_optimal_airmass_day() (in module petitRADTRANS.cli.eso_skycalc_cli) find_spectral_information() (petitRADTRANS.opacities.opacities.Opacity class method) fingerprint_payload (petitRADTRANS.sbi.SBITask property) (petitRADTRANS.sbi.task.SBITask property) finite_difference_schemes (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) finite_difference_steps (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) finput (in module petitRADTRANS.opacities.file_conversion) fisher_correlation (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) fisher_covariance (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) fisher_matrix (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) fit() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.PosteriorEstimator method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) (petitRADTRANS.sbi.PosteriorEstimator method) (petitRADTRANS.sbi.SBITrainer method) (petitRADTRANS.sbi.training.SBITrainer method) fit_covariance (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) fit_flux_offset (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) fit_instrumental_resolution (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) fit_task_preprocessing() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.preprocessing) fits_output() (in module petitRADTRANS.opacities.file_conversion) flatten_object() (in module petitRADTRANS.utils) flow (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.SBIConfig attribute) flow_family (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) FlowConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) FlowMatchingPosterior (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.matching) flux2irradiance() (in module petitRADTRANS.physics) flux_cm2flux_hz() (in module petitRADTRANS.physics) flux_grid (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable attribute) flux_hz2flux_cm() (in module petitRADTRANS.physics) flux_units (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) fluxes (petitRADTRANS.spectral_model.SpectralModel attribute) format2petitradtrans() (in module petitRADTRANS.opacities.file_conversion) forward() (petitRADTRANS.sbi.flows.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveAffineTransform method) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveAffineTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform method) forward_model_family (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) free_affine_loc (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) free_affine_mask (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) free_affine_scale (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) free_parameter_indices (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) free_parameter_names (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) free_parameter_vector() (petitRADTRANS.retrieval.runtime.ParameterLayout method) frequencies (petitRADTRANS.radtrans.Radtrans property) frequency2wavelength() (in module petitRADTRANS.physics) frequency_bins_edges (petitRADTRANS.radtrans.Radtrans property) from_configuration() (petitRADTRANS.retrieval.runtime.ParameterLayout class method) (petitRADTRANS.retrieval.runtime.RetrievalRuntime class method) from_data() (petitRADTRANS.retrieval.Retrieval class method) (petitRADTRANS.retrieval.retrieval.Retrieval class method) (petitRADTRANS.retrieval.runtime.RetrievalRuntime class method) from_dict() (petitRADTRANS.retrieval.parameter.RetrievalParameter class method) from_mapping() (petitRADTRANS.retrieval.runtime.PhysicalParams class method) from_parameters() (petitRADTRANS.retrieval.runtime.ParameterLayout class method) from_payload() (petitRADTRANS.sbi.artifacts.ArtifactMetadata class method) (petitRADTRANS.sbi.artifacts.RegisteredArtifact class method) (petitRADTRANS.sbi.compatibility.TaskFingerprint class method) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest class method) (petitRADTRANS.sbi.preprocessing.TaskPreprocessingMetadata class method) (petitRADTRANS.sbi.TaskPreprocessingMetadata class method) from_radtrans() (petitRADTRANS.spectral_model.SpectralModel class method) from_retrieval() (petitRADTRANS.spectral_model.SpectralModel class method) from_retrieval_config() (petitRADTRANS.sbi.AmortizedRetrieval class method) (petitRADTRANS.sbi.inference.AmortizedRetrieval class method) (petitRADTRANS.sbi.SBITask class method) (petitRADTRANS.sbi.task.SBITask class method) from_serialized_metadata() (petitRADTRANS.sbi.ConditionalFlowPosterior class method) (petitRADTRANS.sbi.FlowMatchingPosterior class method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator class method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior class method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior class method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior class method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator class method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior class method) (petitRADTRANS.sbi.PersistentPosteriorEstimator class method) from_species() (petitRADTRANS.opacities.CIAOpacity class method) (petitRADTRANS.opacities.CloudOpacity class method) (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.CIAOpacity class method) (petitRADTRANS.opacities.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.Opacity class method) from_species_fullname() (petitRADTRANS.opacities.CIAOpacity class method) (petitRADTRANS.opacities.CloudOpacity class method) (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.CIAOpacity class method) (petitRADTRANS.opacities.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.Opacity class method) from_tab_file() (petitRADTRANS.planet.Planet class method) from_task() (petitRADTRANS.sbi.artifacts.ArtifactMetadata class method) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest class method) from_votable() (petitRADTRANS.planet.Planet class method) from_votable_file() (petitRADTRANS.planet.Planet class method) full_extension (petitRADTRANS.opacities.opacities.Opacity attribute) fusion (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) G G (in module petitRADTRANS.physical_constants) gas_continuum_contributors (petitRADTRANS.radtrans.Radtrans property) gaussian_kernel_1d() (in module petitRADTRANS.math) gaussian_prior() (in module petitRADTRANS.retrieval.utils) gaussian_weights_running() (in module petitRADTRANS.math) gedges (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) generate_filename() (petitRADTRANS.planet.Planet static method) generate_local_sensitivity_report() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) generate_mock_data (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) generate_plots (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) generate_posterior_predictive_report() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) generate_retrieval_summary() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) generate_sbc_report() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) generate_simulation_dataset() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.dataset) GeneratedSimulationDataset (class in petitRADTRANS.sbi.dataset) get() (petitRADTRANS.planet.Planet class method) (petitRADTRANS.retrieval.runtime.PhysicalParams method) get_absolute_path() (petitRADTRANS.opacities.opacities.Opacity method) get_abundances() (in module petitRADTRANS.chemistry.core) get_abundances_from_legacy_dict() (in module petitRADTRANS.chemistry.core) get_abundances_legacy() (in module petitRADTRANS.chemistry.core) get_aic() (in module petitRADTRANS.retrieval.log_likelihood) get_airmass() (in module petitRADTRANS.cli.eso_skycalc_cli) get_aliases() (petitRADTRANS.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.CloudOpacity class method) get_astropy_coordinates() (petitRADTRANS.planet.Planet static method) get_base_figure_name() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_base_name() (petitRADTRANS.opacities.opacities.Opacity method) get_base_species_mass_fractions() (in module petitRADTRANS.chemistry.utils) get_best_fit_chi2() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_best_fit_likelihood() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) get_best_fit_model() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_best_fit_parameters() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_bhans() (in module petitRADTRANS.chemistry.clouds) get_bic() (in module petitRADTRANS.retrieval.log_likelihood) get_bpics() (in module petitRADTRANS.retrieval.log_likelihood) get_calculate_flux_return_values() (in module petitRADTRANS.retrieval.utils) get_ccf_model_wavelengths() (in module petitRADTRANS.ccf.ccf) get_ccf_models() (in module petitRADTRANS.ccf.ccf) get_ccf_velocity_space() (in module petitRADTRANS.ccf.ccf) get_charge_string() (petitRADTRANS.opacities.opacities.Opacity method) get_chi2_from_sample() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_chi2_normalisation_from_sample() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_chi_squared() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) get_cia_aliases() (in module petitRADTRANS.opacities.cia) get_cia_contributors() (in module petitRADTRANS.opacities.cia) get_cloud_info() (petitRADTRANS.opacities.opacities.Opacity method) get_co_added_ccf_peak_properties() (in module petitRADTRANS.ccf.ccf) get_co_added_ccf_velocity_space() (in module petitRADTRANS.ccf.ccf) get_convergence_diagnostics() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_data() (in module petitRADTRANS.cli.eso_etc_cli) get_default_category() (petitRADTRANS.opacities.opacities.Opacity class method) get_default_directory() (petitRADTRANS.planet.Planet static method) get_default_extension() (petitRADTRANS.opacities.opacities.Opacity class method) get_default_file() (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable static method) (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable static method) get_default_parameters() (petitRADTRANS.spectral_model.SpectralModel method) get_default_resolving_power() (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.Opacity class method) get_directory() (petitRADTRANS.opacities.opacities.Opacity method) get_easychem_abundances (in module petitRADTRANS.chemistry.core) get_easychem_abundances() (in module petitRADTRANS.chemistry.prt_easychem) get_elpd_per_datapoint() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_etc_url() (in module petitRADTRANS.cli.eso_etc_cli) get_evidence() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_exoatmos_abundances() (in module petitRADTRANS.chemistry.prt_easychem) get_file_name() (petitRADTRANS.opacities.opacities.Opacity method) get_file_name_elements() (petitRADTRANS.opacities.opacities.Opacity class method) get_filename() (petitRADTRANS.planet.Planet method) get_filter() (petitRADTRANS.synthetic_photometry.ReadFilter method) get_flattened_value() (petitRADTRANS.retrieval.parameter.Parameter method) get_frequency_grids_intersection_indices() (in module petitRADTRANS.opacities.load) get_from() (petitRADTRANS.planet.Planet class method) get_fseds() (in module petitRADTRANS.chemistry.clouds) get_full_extension() (petitRADTRANS.opacities.opacities.Opacity method) get_full_name() (petitRADTRANS.opacities.opacities.Opacity method) get_full_range_model() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_input_data_path() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) get_input_data_subpath() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) get_input_data_subpaths() (in module petitRADTRANS.config.configuration) get_isotopologue_name() (petitRADTRANS.opacities.opacities.Opacity method) get_keeper_files_url_paths() (in module petitRADTRANS.cli.prt_cli) get_line_opacity_file() (in module petitRADTRANS.opacities.load) get_line_separator() (in module petitRADTRANS.slurm_runs.sbatch) get_log_likelihood_per_datapoint() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_mass_fractions() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_median_params() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_model_functions() (petitRADTRANS.spectral_model.SpectralModel method) get_model_parameters() (petitRADTRANS.spectral_model.SpectralModel method) get_molmass_name() (in module petitRADTRANS.chemistry.prt_molmass) get_mpi_context() (in module petitRADTRANS.retrieval._mpi) get_noise_normalization_constant() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) get_non_cia_gas_continuum_contributions() (in module petitRADTRANS.opacities.hminus) get_opacity_filename() (in module petitRADTRANS.opacities.file_conversion) get_opacity_sources_dict() (in module petitRADTRANS.opacities.load) get_optimal_airmass_curve() (in module petitRADTRANS.cli.eso_skycalc_cli) get_param_uniform() (petitRADTRANS.retrieval.parameter.Parameter method) get_parameter_value() (in module petitRADTRANS.chemistry.utils) get_parameters_prior_mid_range_values() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_posterior_estimator_class() (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) get_pymultinest_analyzer() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_pymultinest_sample_dict() (in module petitRADTRANS.retrieval.utils) get_quantile_parameters() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_reduced_chi2_from_model() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_reduced_chi2_from_sample() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_reduced_chi_squared() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) get_reference_data() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) get_reference_data_name() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) get_reference_radtrans_data() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) get_reference_radtrans_name() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) get_resolving_power_from_string() (petitRADTRANS.opacities.opacities.Opacity class method) get_resolving_power_string() (petitRADTRANS.opacities.opacities.Opacity class method) get_results() (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.UltranestSampler method) get_samples() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_samples_dict() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) get_snr_data_file_name() (in module petitRADTRANS.cli.eso_etc_cli) get_solar_elemental_abundances() (in module petitRADTRANS.chemistry.utils) get_special_parameters() (petitRADTRANS.retrieval.Retrieval static method) (petitRADTRANS.retrieval.retrieval.Retrieval static method) get_species_base_name() (petitRADTRANS.opacities.opacities.Opacity class method) get_species_color() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) get_species_directory() (petitRADTRANS.opacities.opacities.Opacity class method) get_species_elements() (in module petitRADTRANS.chemistry.prt_molmass) get_species_isotopologue_name() (petitRADTRANS.opacities.opacities.Opacity class method) get_species_molar_mass() (in module petitRADTRANS.chemistry.prt_molmass) get_species_scientific_name() (petitRADTRANS.opacities.opacities.Opacity class method) get_spectral_info() (petitRADTRANS.opacities.opacities.Opacity method) get_summary() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler method) (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.PymultinestSampler method) (petitRADTRANS.retrieval.sampler.Sampler method) (petitRADTRANS.retrieval.sampler.UltranestSampler method) get_telluric_data() (in module petitRADTRANS.cli.eso_skycalc_cli) get_telluric_transmittances() (petitRADTRANS.spectral_model.SpectralModel method) get_tellurics_npz() (in module petitRADTRANS.cli.eso_skycalc_cli) get_true_parameters() (petitRADTRANS.spectral_model.SpectralModel method) get_volume_mixing_ratios() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) (petitRADTRANS.spectral_model.SpectralModel method) get_wavelengths() (petitRADTRANS.radtrans.Radtrans method) ggrid (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) global_covariance_kernel (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) gpdfitnew() (in module petitRADTRANS.retrieval.psis) gpinv() (in module petitRADTRANS.retrieval.psis) GRAD_SAFE_DENOM (in module petitRADTRANS.radtrans_core.linalg) gradient_clip_norm (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) gradient_profile_emission (in module petitRADTRANS.retrieval.models) gradient_profile_emission() (in module petitRADTRANS.retrieval.models) gravity (petitRADTRANS.retrieval.runtime.ModelInputs attribute) grouped_for_diagnostics (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) guardrail_posterior_samples (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) guardrail_predictive_forward_model_samples (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) guillot_dayside_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_emission (in module petitRADTRANS.retrieval.models) guillot_emission() (in module petitRADTRANS.retrieval.models) guillot_emission_add_gaussian_temperature (in module petitRADTRANS.retrieval.models) guillot_emission_add_gaussian_temperature() (in module petitRADTRANS.retrieval.models) guillot_global_ret_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_global_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_metallic_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_modif_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_patchy_emission (in module petitRADTRANS.retrieval.models) guillot_patchy_emission() (in module petitRADTRANS.retrieval.models) guillot_patchy_transmission (in module petitRADTRANS.retrieval.models) guillot_patchy_transmission() (in module petitRADTRANS.retrieval.models) guillot_relative_emission() (in module petitRADTRANS.retrieval.models) guillot_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.guillot) guillot_transmission (in module petitRADTRANS.retrieval.models) guillot_transmission() (in module petitRADTRANS.retrieval.models) H h (in module petitRADTRANS.physical_constants) H2_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) h2o_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) handle_dimenstionality_dispatch() (in module petitRADTRANS.retrieval.utils) has_colliding_species (petitRADTRANS.opacities.opacities.Opacity property) haze_factor (petitRADTRANS.retrieval.runtime.ModelInputs attribute) hdf52dict() (in module petitRADTRANS.utils) HDF5SimulationDatasetStore (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.dataset) HDF5SimulationDatasetWriter (class in petitRADTRANS.sbi.dataset) HDF5StoredSimulationDataset (class in petitRADTRANS.sbi.dataset) He_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) hessian (in module petitRADTRANS.retrieval.sampler) hidden_dim (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.EncoderConfig attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.EncoderConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) history (petitRADTRANS.sbi.flows.base.TrainingArtifacts attribute) (petitRADTRANS.sbi.flows.TrainingArtifacts attribute) host_name (petitRADTRANS.planet.Planet attribute) HUGE_SQRT (in module petitRADTRANS.radtrans_core.linalg) (in module petitRADTRANS.radtrans_core.radiative_transfer_core) hydrate_loaded_metadata() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) hz2um() (in module petitRADTRANS.physics) I importance_sampling_posterior_on_observation() (in module petitRADTRANS.sbi.flows.refinement) (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) index_path (petitRADTRANS.sbi.artifacts.FileArtifactRegistry attribute) infer() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) infer_split_counts() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.dataset) init_cia_loaded_opacities() (in module petitRADTRANS.opacities.cia) init_clouds_particle_porosity_factor() (in module petitRADTRANS.opacities.clouds) init_data() (petitRADTRANS.spectral_model.SpectralModel method) init_default() (petitRADTRANS.config.configuration.PetitradtransConfigParser class method) init_filter_database() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) init_meson_build() (in module petitRADTRANS.__setup_meson_build) init_retrieval() (petitRADTRANS.spectral_model.SpectralModel method) initialise_data_resolution() (petitRADTRANS.retrieval.data.Data method) (petitRADTRANS.retrieval.data.TimeSeriesData method) initialise_radtrans_objects() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) initialize_pressure() (in module petitRADTRANS.retrieval.models) initialize_pressure_from_legacy_dict() (in module petitRADTRANS.retrieval.models) input_dim (petitRADTRANS.sbi.flows.CouplingConditioner attribute) (petitRADTRANS.sbi.flows.transforms.CouplingConditioner attribute) input_projection (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) insolation_flux (petitRADTRANS.planet.Planet attribute) insolation_flux_error_lower (petitRADTRANS.planet.Planet attribute) insolation_flux_error_upper (petitRADTRANS.planet.Planet attribute) instruments (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) integ_parab() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) integrate_opacities() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) integration_steps (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) interpolate_chemical_table() (in module petitRADTRANS.chemistry.pre_calculated_chemistry) interpolate_cia() (in module petitRADTRANS.opacities.cia) interpolate_cloud_opacities() (in module petitRADTRANS.radtrans_core.cloud_core) interpolate_cloud_opacities_fortran() (in module petitRADTRANS.radtrans_core.cloud_core) interpolate_filter() (petitRADTRANS.synthetic_photometry.ReadFilter method) interpolate_line_opacities() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) interpolate_mass_fractions() (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable method) interpolate_species_opacities() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) interpolate_species_opacities_summed() (in module petitRADTRANS.radtrans_core.interpolate_line_opacities) interpolated_profile_emission (in module petitRADTRANS.retrieval.models) interpolated_profile_emission() (in module petitRADTRANS.retrieval.models) intersection_indices() (in module petitRADTRANS.utils) interval_coverage (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) interval_lower (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) interval_upper (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) inv_cov (petitRADTRANS.retrieval.data.Data attribute) inv_covariance (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) inv_covariance_diagonal (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) INVALID_VALUE (in module petitRADTRANS.chemistry.core) inverse() (petitRADTRANS.sbi.flows.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveAffineTransform method) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveAffineTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling method) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform method) inverse_base_bound (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) inverse_bisection_steps (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) inverse_expansion_steps (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) inverse_forward_logdet_closure_max_abs_error (petitRADTRANS.sbi.config.StabilityConfig attribute) (petitRADTRANS.sbi.StabilityConfig attribute) inverse_forward_max_abs_error (petitRADTRANS.sbi.config.StabilityConfig attribute) (petitRADTRANS.sbi.StabilityConfig attribute) inverse_gamma_prior() (in module petitRADTRANS.retrieval.utils) inverse_newton_steps (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) inverse_with_diagnostics() (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow method) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow method) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform method) invertibility_loss_n_samples (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) invertibility_loss_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) invertibility_penalty() (in module petitRADTRANS.sbi.flows.objectives) is_compatible (petitRADTRANS.sbi.compatibility.CompatibilityReport attribute) is_divergent (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) is_forward_batch_size (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) is_free_parameter (petitRADTRANS.retrieval.parameter.Parameter attribute) is_num_proposal_samples (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) is_sorted() (in module petitRADTRANS.opacities.correlated_k_binning) ism_extinction() (in module petitRADTRANS.physics) isothermal_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.isothermal) isothermal_transmission (in module petitRADTRANS.retrieval.models) isothermal_transmission() (in module petitRADTRANS.retrieval.models) isotopolog_id (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) iter_batches() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) iter_split_chunks() (petitRADTRANS.sbi.dataset.HDF5StoredSimulationDataset method) J jax (in module petitRADTRANS.retrieval.optimal_estimation) JAX_DTYPE (in module petitRADTRANS.jax_dtype) jaxns (in module petitRADTRANS.retrieval.sampler) jaxns_parameters (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) jaxns_resample (in module petitRADTRANS.retrieval.sampler) JAXNSSampler (class in petitRADTRANS.retrieval.sampler) JAXNSShardedStaticNestedSampler (class in petitRADTRANS.retrieval.sampler) jit (in module petitRADTRANS.retrieval.sampler) jnp (in module petitRADTRANS.retrieval.optimal_estimation) (in module petitRADTRANS.retrieval.sampler) join_species_all_info() (petitRADTRANS.opacities.opacities.Opacity class method) K kB (in module petitRADTRANS.physical_constants) kdata (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) kdata_unit (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) kernel_class (petitRADTRANS.retrieval.sampler.NumPyroHMCSampler property) (petitRADTRANS.retrieval.sampler.NumPyroNUTSSampler property) (petitRADTRANS.retrieval.sampler.NumPyroSampler property) keys() (petitRADTRANS.retrieval.runtime.PhysicalParams method) kind (petitRADTRANS.retrieval.runtime.ModelResult attribute) Ktable (class in petitRADTRANS.opacities.correlated_k_binning) L L0 (in module petitRADTRANS.physical_constants) l_sun (in module petitRADTRANS.physical_constants) label (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) laplace_covariance() (in module petitRADTRANS.retrieval.optimal_estimation) latest_run_pointer_path() (in module petitRADTRANS.sbi.artifacts) latest_sampler_results (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) lax (in module petitRADTRANS.retrieval.sampler) layers (petitRADTRANS.sbi.flows.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) learning_rate (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) legacy_gradient_profile_emission() (in module petitRADTRANS.retrieval.models) legacy_guillot_emission() (in module petitRADTRANS.retrieval.models) legacy_guillot_emission_add_gaussian_temperature() (in module petitRADTRANS.retrieval.models) legacy_guillot_patchy_emission() (in module petitRADTRANS.retrieval.models) legacy_guillot_patchy_transmission() (in module petitRADTRANS.retrieval.models) legacy_guillot_transmission() (in module petitRADTRANS.retrieval.models) legacy_interpolated_profile_emission() (in module petitRADTRANS.retrieval.models) legacy_isothermal_transmission() (in module petitRADTRANS.retrieval.models) legacy_madhu_seager_patchy_transmission() (in module petitRADTRANS.retrieval.models) legacy_madhushudhan_seager_emission() (in module petitRADTRANS.retrieval.models) legacy_madhushudhan_seager_transmission() (in module petitRADTRANS.retrieval.models) legacy_molliere_2020_emission() (in module petitRADTRANS.retrieval.models) legacy_molliere_2020_two_column() (in module petitRADTRANS.retrieval.models) legacy_power_law_profile_emission() (in module petitRADTRANS.retrieval.models) legacy_power_law_profile_transmission() (in module petitRADTRANS.retrieval.models) level (petitRADTRANS.sbi.calibration.CoverageLevelReport attribute) light_year (in module petitRADTRANS.physical_constants) likelihood_devices (petitRADTRANS.retrieval.sampler.SamplerContext attribute) likelihoods (petitRADTRANS.retrieval.runtime.RetrievalRuntime attribute) LikelihoodState (class in petitRADTRANS.retrieval.runtime) line_b_uncertainty_scaling() (petitRADTRANS.retrieval.data.Data method) line_by_line_opacities_dat2h5() (in module petitRADTRANS.opacities.file_conversion) line_by_line_opacity_sampling (petitRADTRANS.radtrans.Radtrans property) line_opacity_mode (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) line_opacity_modes (petitRADTRANS.sbi.SBITask property) (petitRADTRANS.sbi.task.SBITask property) line_species (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) linear_fit() (in module petitRADTRANS.radtrans_core.linalg) linear_spline_interpolation() (in module petitRADTRANS.radtrans_core.spectrum_utils) linear_spline_profile() (in module petitRADTRANS.chemistry.utils) linear_spline_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.spline) LineByLineOpacity (class in petitRADTRANS.opacities) (class in petitRADTRANS.opacities.opacities) lines_loaded_opacities (petitRADTRANS.radtrans.Radtrans property) list_available_cia_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig static method) (petitRADTRANS.retrieval.RetrievalConfig static method) list_available_cloud_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig static method) (petitRADTRANS.retrieval.RetrievalConfig static method) list_available_line_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig static method) (petitRADTRANS.retrieval.RetrievalConfig static method) list_str2str() (in module petitRADTRANS.utils) load() (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable method) (petitRADTRANS.config.configuration.PetitradtransConfigParser method) (petitRADTRANS.opacities.opacities.Opacity method) (petitRADTRANS.planet.Planet class method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator class method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator class method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator class method) (petitRADTRANS.sbi.flows.PosteriorEstimator class method) (petitRADTRANS.sbi.PersistentPosteriorEstimator class method) (petitRADTRANS.sbi.PosteriorEstimator class method) (petitRADTRANS.spectral_model.SpectralModel class method) (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable method) load_all_opacities() (petitRADTRANS.radtrans.Radtrans method) load_backend_state() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) load_cia_opacities() (petitRADTRANS.radtrans.Radtrans method) load_cia_opacity() (in module petitRADTRANS.opacities.load) load_cloud_opacities() (petitRADTRANS.radtrans.Radtrans method) load_cloud_opacity() (in module petitRADTRANS.opacities.load) load_completed_model (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) load_csv() (in module petitRADTRANS.utils) load_dace() (in module petitRADTRANS.opacities.file_conversion) load_dat() (in module petitRADTRANS.slurm_runs.utils) load_exocross() (in module petitRADTRANS.opacities.file_conversion) load_hdf5_ktables() (petitRADTRANS.radtrans.Radtrans class method) load_hdf5_line_opacity_table() (in module petitRADTRANS.opacities.load) load_line_opacities() (petitRADTRANS.radtrans.Radtrans method) load_line_opacities_pressure_temperature_grid() (in module petitRADTRANS.opacities.load) load_posterior_estimator() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) load_results (in module petitRADTRANS.retrieval.sampler) load_results() (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.PymultinestSampler method) (petitRADTRANS.retrieval.sampler.Sampler method) (petitRADTRANS.retrieval.sampler.UltranestSampler method) load_single_spectrum_txt() (petitRADTRANS.retrieval.data.TimeSeriesData method) load_trainer_checkpoint_state() (in module petitRADTRANS.sbi.training) load_x1d_fits() (petitRADTRANS.retrieval.data.Data method) loadfits() (petitRADTRANS.retrieval.data.Data method) loadtxt() (petitRADTRANS.retrieval.data.Data method) (petitRADTRANS.retrieval.data.TimeSeriesData method) local_covariance_kernel (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) local_device_count (in module petitRADTRANS.retrieval.sampler) local_sensitivity_report_to_payload() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) local_sigma (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) localized_squared_exponential_kernel() (in module petitRADTRANS.retrieval.covariance) LocalSensitivityPointReport (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.calibration) LocalSensitivityReport (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.calibration) location (petitRADTRANS.sbi.artifacts.RegisteredArtifact attribute) lock() (petitRADTRANS.utils.LockedDict method) LockedDict (class in petitRADTRANS.utils) log10_effective_temperature_grid (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable attribute) log10_metallicities (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) log10_observation_scale (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) log10_training_p1 (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) log10_training_p50 (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) log10_training_p99 (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) log_covariance_determinant (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) log_det_covariance (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) log_efficiency (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) log_gaussian_prior() (in module petitRADTRANS.retrieval.utils) log_jacobian() (petitRADTRANS.retrieval.runtime.ParameterLayout method) log_jacobian_single() (petitRADTRANS.retrieval.runtime.ParameterLayout method) log_likelihood (petitRADTRANS.retrieval.multichain.CombinedNested attribute) (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) log_likelihood() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) log_likelihood2chi2() (petitRADTRANS.retrieval.log_likelihood.LogLikelihood static method) log_likelihood_func (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) (petitRADTRANS.retrieval.sampler.Sampler attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) log_likelihood_jax() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) log_likelihood_normalization (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) log_median_flux (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) log_prior() (in module petitRADTRANS.retrieval.utils) log_prob() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.PosteriorEstimator method) (petitRADTRANS.sbi.PosteriorEstimator method) log_probabilities (petitRADTRANS.sbi.flows.base.PosteriorSamples attribute) (petitRADTRANS.sbi.flows.PosteriorSamples attribute) (petitRADTRANS.sbi.PosteriorSamples attribute) log_Z_mean (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) log_Z_uncert (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) logdensity (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) logger (in module petitRADTRANS.sbi.simulator) logk (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) LogLikelihood (class in petitRADTRANS.retrieval.log_likelihood) logpgrid (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) longitude2phase() (in module petitRADTRANS.math) loss_from_observations() (in module petitRADTRANS.sbi.flows.objectives) lr_schedule_total_epochs (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) M m_earth (in module petitRADTRANS.physical_constants) m_elec (in module petitRADTRANS.physical_constants) m_jup (in module petitRADTRANS.physical_constants) m_sun (in module petitRADTRANS.physical_constants) madhu_seager_patchy_transmission (in module petitRADTRANS.retrieval.models) madhu_seager_patchy_transmission() (in module petitRADTRANS.retrieval.models) madhushudhan_seager_emission (in module petitRADTRANS.retrieval.models) madhushudhan_seager_emission() (in module petitRADTRANS.retrieval.models) madhushudhan_seager_transmission (in module petitRADTRANS.retrieval.models) madhushudhan_seager_transmission() (in module petitRADTRANS.retrieval.models) madhusudhan_seager_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.madhusudhan) make_digest() (in module petitRADTRANS.sbi.compatibility) make_elbo_loss() (in module petitRADTRANS.sbi.flows.objectives) make_mesh (in module petitRADTRANS.retrieval.sampler) make_nan_result() (petitRADTRANS.retrieval.runtime.ModelResult static method) make_srun_script_from_template() (in module petitRADTRANS.slurm_runs.sbatch) make_unified_model() (in module petitRADTRANS.retrieval.models) make_walker_inits() (in module petitRADTRANS.retrieval.optimal_estimation) manifest (petitRADTRANS.sbi.dataset.GeneratedSimulationDataset attribute) (petitRADTRANS.sbi.dataset.HDF5StoredSimulationDataset attribute) map_beta_anneal_fraction (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_beta_start (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_covariance_method (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_laplace_posterior_on_observation() (in module petitRADTRANS.sbi.flows.refinement) (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) map_learning_rate (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_num_steps (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_vi_learning_rate (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_vi_num_samples (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) map_vi_num_steps (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) mark_legacy_model_function() (in module petitRADTRANS.retrieval.models) mask (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) (petitRADTRANS.sbi.flows.ConditionalAffineCoupling property) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling property) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling property) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling property) (petitRADTRANS.sbi.observation.EncodedObservation attribute) (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) mask_values (petitRADTRANS.sbi.flows.ConditionalAffineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) mass (petitRADTRANS.planet.Planet attribute) mass2reference_gravity() (petitRADTRANS.planet.Planet static method) (petitRADTRANS.spectral_model.SpectralModel static method) mass2reference_gravity_jax() (in module petitRADTRANS.planet) mass_error_lower (petitRADTRANS.planet.Planet attribute) mass_error_upper (petitRADTRANS.planet.Planet attribute) mass_fractions (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) (petitRADTRANS.spectral_model.SpectralModel attribute) mass_fractions2metallicity() (in module petitRADTRANS.chemistry.utils) mass_fractions2volume_mixing_ratios() (in module petitRADTRANS.chemistry.utils) match_function_default() (in module petitRADTRANS._input_data) matern32_kernel() (in module petitRADTRANS.retrieval.covariance) matter_state (petitRADTRANS.opacities.opacities.Opacity attribute) max_abs_residual (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) max_bracket_width (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) max_derivative (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) max_expansion_steps (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) max_inclusive (petitRADTRANS.sbi.ObservationValueConstraint attribute) (petitRADTRANS.sbi.task.ObservationValueConstraint attribute) max_orders_outside (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) max_value (petitRADTRANS.sbi.ObservationValueConstraint attribute) (petitRADTRANS.sbi.task.ObservationValueConstraint attribute) mcmc (petitRADTRANS.retrieval.sampler.NumPyroSampler attribute) MCMCChainArrays (class in petitRADTRANS.retrieval.multichain) MCMCChainCombiner (class in petitRADTRANS.retrieval.multichain) mean_abs_residual (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) mean_absolute_error (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) mean_absolute_error_sigma (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) mean_bracket_width (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) mean_expansion_steps (petitRADTRANS.sbi.flows.NeuralInverseDiagnostics attribute) (petitRADTRANS.sbi.flows.transforms.NeuralInverseDiagnostics attribute) mean_molar_masses (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) (petitRADTRANS.retrieval.runtime.ModelInputs attribute) (petitRADTRANS.spectral_model.SpectralModel attribute) mean_rank (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) mean_uncertainty() (in module petitRADTRANS.math) mean_wavelength() (petitRADTRANS.synthetic_photometry.ReadFilter method) median_filter() (in module petitRADTRANS.math) median_filter_spectrum() (in module petitRADTRANS.radtrans_core.spectrum_utils) median_interval_width_over_uncertainty (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) median_uncertainties() (in module petitRADTRANS.math) metadata (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) (petitRADTRANS.sbi.AmortizedRetrievalResult attribute) (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.artifacts.RegisteredArtifact attribute) (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.flows.base.PosteriorBatch attribute) (petitRADTRANS.sbi.flows.base.PosteriorSamples attribute) (petitRADTRANS.sbi.flows.base.TrainingArtifacts attribute) (petitRADTRANS.sbi.flows.PosteriorBatch attribute) (petitRADTRANS.sbi.flows.PosteriorSamples attribute) (petitRADTRANS.sbi.flows.TrainingArtifacts attribute) (petitRADTRANS.sbi.inference.AmortizedRetrievalResult attribute) (petitRADTRANS.sbi.inference.OODDiagnostic attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) (petitRADTRANS.sbi.observation.EncodedObservation attribute) (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationSchema attribute) (petitRADTRANS.sbi.OODDiagnostic attribute) (petitRADTRANS.sbi.PosteriorBatch attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorSamples attribute) (petitRADTRANS.sbi.preprocessing.TaskPreprocessingMetadata attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.task.ObservationSchema attribute) (petitRADTRANS.sbi.task.SBITask attribute) (petitRADTRANS.sbi.TaskPreprocessingMetadata attribute) metadata_file (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) metadata_schema_version (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) method (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) min_bin_height (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) min_bin_width (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) min_delta (petitRADTRANS.sbi.EarlyStoppingConfig attribute) (petitRADTRANS.sbi.training.EarlyStoppingConfig attribute) min_derivative (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) min_inclusive (petitRADTRANS.sbi.ObservationValueConstraint attribute) (petitRADTRANS.sbi.task.ObservationValueConstraint attribute) min_learning_rate (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) min_residual (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) min_slope (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) min_value (petitRADTRANS.sbi.ObservationValueConstraint attribute) (petitRADTRANS.sbi.task.ObservationValueConstraint attribute) mismatches (petitRADTRANS.sbi.compatibility.CompatibilityReport attribute) MLFriends (in module petitRADTRANS.retrieval.sampler) modalities (petitRADTRANS.sbi.observation.PreStackedObservations attribute) (petitRADTRANS.sbi.ObservationSchema attribute) (petitRADTRANS.sbi.task.ObservationSchema attribute) modality (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) mode (petitRADTRANS.retrieval.runtime.ModelContext attribute) (petitRADTRANS.sbi.NoiseModelConfig attribute) (petitRADTRANS.sbi.task.NoiseModelConfig attribute) Model (in module petitRADTRANS.retrieval.sampler) model (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) model_context (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) model_contract (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) MODEL_CONTRACT_DIFFERENTIABLE (in module petitRADTRANS.retrieval.models) MODEL_CONTRACT_LEGACY (in module petitRADTRANS.retrieval.models) MODEL_CONTRACT_LEGACY_ADAPTER (in module petitRADTRANS.retrieval.models) model_functions_map (petitRADTRANS.spectral_model.SpectralModel attribute) model_generating_function (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) model_groups (petitRADTRANS.retrieval.runtime.RetrievalRuntime attribute) model_log_likelihood (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) model_metadata (petitRADTRANS.retrieval.runtime.ModelContext attribute) model_parameters (petitRADTRANS.spectral_model.SpectralModel attribute) model_resolution (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) model_spectrum (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) ModelContext (class in petitRADTRANS.retrieval.runtime) ModelGroupState (class in petitRADTRANS.retrieval.runtime) ModelInputs (class in petitRADTRANS.retrieval.runtime) ModelResult (class in petitRADTRANS.retrieval.runtime) modify_isotope_numbers() (petitRADTRANS.opacities.opacities.Opacity class method) modify_spectrum() (petitRADTRANS.spectral_model.SpectralModel static method) module petitRADTRANS petitRADTRANS.__setup_meson_build petitRADTRANS._input_data petitRADTRANS.ccf petitRADTRANS.ccf.ccf petitRADTRANS.ccf.ccf_core petitRADTRANS.chemistry petitRADTRANS.chemistry.clouds petitRADTRANS.chemistry.core petitRADTRANS.chemistry.pre_calculated_chemistry petitRADTRANS.chemistry.prt_easychem petitRADTRANS.chemistry.prt_molmass petitRADTRANS.chemistry.utils petitRADTRANS.chemistry.vapour_pressures petitRADTRANS.cli petitRADTRANS.cli.eso_etc_cli petitRADTRANS.cli.eso_skycalc_cli petitRADTRANS.cli.prt_cli petitRADTRANS.config petitRADTRANS.config.configuration petitRADTRANS.jax_dtype petitRADTRANS.math petitRADTRANS.opacities petitRADTRANS.opacities.cia petitRADTRANS.opacities.clouds petitRADTRANS.opacities.continuum petitRADTRANS.opacities.correlated_k_binning petitRADTRANS.opacities.file_conversion petitRADTRANS.opacities.hminus petitRADTRANS.opacities.load petitRADTRANS.opacities.opacities petitRADTRANS.opacities.optical_depths petitRADTRANS.opacities.rayleigh petitRADTRANS.opacities.registry petitRADTRANS.opacities.rosseland petitRADTRANS.opacities.write petitRADTRANS.physical_constants petitRADTRANS.physics petitRADTRANS.planet petitRADTRANS.plotlib petitRADTRANS.plotlib.plotlib petitRADTRANS.plotlib.style petitRADTRANS.radtrans petitRADTRANS.radtrans_core petitRADTRANS.radtrans_core.ck_mixing_ffi petitRADTRANS.radtrans_core.cloud_core petitRADTRANS.radtrans_core.interpolate_line_opacities petitRADTRANS.radtrans_core.linalg petitRADTRANS.radtrans_core.physics_core petitRADTRANS.radtrans_core.radiative_transfer_core petitRADTRANS.radtrans_core.rayleigh_scattering petitRADTRANS.radtrans_core.spectrum_utils petitRADTRANS.retrieval petitRADTRANS.retrieval._mpi petitRADTRANS.retrieval.covariance petitRADTRANS.retrieval.data petitRADTRANS.retrieval.dynesty_pool_helpers petitRADTRANS.retrieval.log_likelihood petitRADTRANS.retrieval.models petitRADTRANS.retrieval.multichain petitRADTRANS.retrieval.optimal_estimation petitRADTRANS.retrieval.parameter petitRADTRANS.retrieval.parameter_aliases petitRADTRANS.retrieval.plotting petitRADTRANS.retrieval.preparing petitRADTRANS.retrieval.psis petitRADTRANS.retrieval.retrieval petitRADTRANS.retrieval.retrieval_config petitRADTRANS.retrieval.runtime petitRADTRANS.retrieval.sampler petitRADTRANS.retrieval.utils petitRADTRANS.sbi petitRADTRANS.sbi.artifacts petitRADTRANS.sbi.calibration petitRADTRANS.sbi.compatibility petitRADTRANS.sbi.config petitRADTRANS.sbi.dataset petitRADTRANS.sbi.encoders petitRADTRANS.sbi.flows petitRADTRANS.sbi.flows.base petitRADTRANS.sbi.flows.cube petitRADTRANS.sbi.flows.matching petitRADTRANS.sbi.flows.objectives petitRADTRANS.sbi.flows.posterior petitRADTRANS.sbi.flows.refinement petitRADTRANS.sbi.flows.regularization petitRADTRANS.sbi.flows.transforms petitRADTRANS.sbi.inference petitRADTRANS.sbi.observation petitRADTRANS.sbi.plotting petitRADTRANS.sbi.preprocessing petitRADTRANS.sbi.simulator petitRADTRANS.sbi.task petitRADTRANS.sbi.training petitRADTRANS.sbi.validation petitRADTRANS.sbi.workflow petitRADTRANS.slurm_runs petitRADTRANS.slurm_runs.sbatch petitRADTRANS.slurm_runs.utils petitRADTRANS.spectral_model petitRADTRANS.stellar_spectra petitRADTRANS.stellar_spectra.phoenix petitRADTRANS.synthetic_photometry petitRADTRANS.temperature_profiles petitRADTRANS.temperature_profiles.gradient petitRADTRANS.temperature_profiles.guillot petitRADTRANS.temperature_profiles.isothermal petitRADTRANS.temperature_profiles.madhusudhan petitRADTRANS.temperature_profiles.molliere petitRADTRANS.temperature_profiles.power_law petitRADTRANS.temperature_profiles.spline petitRADTRANS.utils petitRADTRANS.validation module_dir (in module petitRADTRANS.cli.eso_etc_cli) mol (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) molliere_2020_emission (in module petitRADTRANS.retrieval.models) molliere_2020_emission() (in module petitRADTRANS.retrieval.models) molliere_2020_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.molliere) molliere_2020_two_column (in module petitRADTRANS.retrieval.models) molliere_2020_two_column() (in module petitRADTRANS.retrieval.models) MPI (in module petitRADTRANS.opacities.opacities) (in module petitRADTRANS.retrieval._mpi) N n2_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) n_data_points (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) n_dim (petitRADTRANS.retrieval.multichain.MCMCChainArrays property) (petitRADTRANS.retrieval.multichain.NestedChainArrays property) n_draws (petitRADTRANS.retrieval.multichain.MCMCChainArrays property) n_free_parameters (petitRADTRANS.retrieval.log_likelihood.LogLikelihood attribute) (petitRADTRANS.retrieval.runtime.LikelihoodState attribute) (petitRADTRANS.retrieval.runtime.ParameterLayout property) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) n_local_covariance_kernels (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) n_per_chain (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) n_posterior_samples (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) n_predictive_forward_model_samples (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) n_samples (petitRADTRANS.retrieval.multichain.NestedChainArrays property) (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) (petitRADTRANS.sbi.SimulationBatch property) (petitRADTRANS.sbi.simulator.SimulationBatch property) n_simulations (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.SBIConfig attribute) (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) n_starts (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) n_steps_run (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) n_total (petitRADTRANS.retrieval.multichain.CombinedMCMC property) n_validation_diagnostic_batches (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) n_values (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) n_wavelengths (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) nA (in module petitRADTRANS.physical_constants) nabla_adiabatic (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) name (petitRADTRANS.planet.Planet attribute) (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.parameter.Parameter attribute) (petitRADTRANS.retrieval.parameter.RetrievalParameter attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) (petitRADTRANS.sbi.training.CheckpointBackend attribute) (petitRADTRANS.sbi.training.EquinoxCheckpointBackend attribute) (petitRADTRANS.sbi.training.OrbaxCheckpointBackend attribute) NamedSharding (in module petitRADTRANS.retrieval.sampler) natural_abundance (petitRADTRANS.opacities.opacities.Opacity attribute) NestedChainArrays (class in petitRADTRANS.retrieval.multichain) NestedChainCombiner (class in petitRADTRANS.retrieval.multichain) NestedSampler (in module petitRADTRANS.retrieval.sampler) network (petitRADTRANS.sbi.flows.CouplingConditioner attribute) (petitRADTRANS.sbi.flows.transforms.CouplingConditioner attribute) neural_autoregressive_inverse_bisection_steps (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) neural_autoregressive_min_residual (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) neural_autoregressive_min_slope (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) NeuralInverseDiagnostics (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.transforms) Ng (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) noise_model (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) noise_resample_during_training (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) noise_resampling (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) NoiseModelConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.task) norm (petitRADTRANS.sbi.encoders.SpectralConvolutionEncoder attribute) normalize() (in module petitRADTRANS.math) normalize_covariance_mode() (in module petitRADTRANS.retrieval.covariance) normalize_global_kernel_name() (in module petitRADTRANS.retrieval.covariance) normalize_local_kernel_name() (in module petitRADTRANS.retrieval.covariance) normalize_observation_block() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.preprocessing) normalize_observation_blocks() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.preprocessing) normalize_parameter_mapping() (in module petitRADTRANS.retrieval.parameter_aliases) normalize_parameter_name() (in module petitRADTRANS.retrieval.parameter_aliases) normalize_spectral_block_matrix() (in module petitRADTRANS.sbi.preprocessing) normalized_mean_rank_error (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) NormalizedObservationDatasetReader (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.dataset) Np (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) Nt (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) num_bins (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalScalarSplineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) num_coupling_layers (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) num_epochs (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) num_integration_steps (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) num_spline_bins (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) num_transforms (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) num_velocity_layers (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) numpyro (in module petitRADTRANS.retrieval.sampler) NumPyroHMC (in module petitRADTRANS.retrieval.sampler) NumPyroHMCSampler (class in petitRADTRANS.retrieval.sampler) NumPyroMCMC (in module petitRADTRANS.retrieval.sampler) NumPyroNUTS (in module petitRADTRANS.retrieval.sampler) NumPyroNUTSSampler (class in petitRADTRANS.retrieval.sampler) NumPyroSampler (class in petitRADTRANS.retrieval.sampler) NumPyroSamplingResults (class in petitRADTRANS.retrieval.sampler) Nw (petitRADTRANS.opacities.correlated_k_binning.Spectral_object attribute) Nx (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) O o2_rayleigh() (in module petitRADTRANS.radtrans_core.rayleigh_scattering) observation_names (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) observation_schema (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) observation_value_constraint (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) observation_value_constraints (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) ObservationBlock (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.observation) ObservationEncoder (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.encoders) ObservationModality (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.observation) observations (petitRADTRANS.retrieval.runtime.RetrievalRuntime attribute) (petitRADTRANS.sbi.flows.base.PosteriorBatch attribute) (petitRADTRANS.sbi.flows.PosteriorBatch attribute) (petitRADTRANS.sbi.PosteriorBatch attribute) (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) ObservationScaleReport (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.validation) ObservationSchema (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.task) ObservationState (class in petitRADTRANS.retrieval.runtime) ObservationValueConstraint (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.task) observed (petitRADTRANS.sbi.compatibility.CompatibilityReport attribute) observed_values (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) offload_results_to_cpu (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) offset (petitRADTRANS.retrieval.data.Data attribute) offset_flux() (petitRADTRANS.retrieval.data.Data method) ood_diagnostic (petitRADTRANS.sbi.AmortizedRetrievalResult attribute) (petitRADTRANS.sbi.inference.AmortizedRetrievalResult attribute) OODDiagnostic (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.inference) Opacity (class in petitRADTRANS.opacities.opacities) opacity_digest (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) opaque_cloud_top_pressure (petitRADTRANS.retrieval.runtime.ModelInputs attribute) open() (petitRADTRANS.sbi.dataset.HDF5SimulationDatasetStore method) (petitRADTRANS.sbi.dataset.SimulationDatasetStore method) (petitRADTRANS.sbi.HDF5SimulationDatasetStore method) (petitRADTRANS.sbi.SimulationDatasetStore method) optax (in module petitRADTRANS.retrieval.optimal_estimation) OptimalEstimationResults (class in petitRADTRANS.retrieval.optimal_estimation) OptimalEstimationSampler (class in petitRADTRANS.retrieval.optimal_estimation) optimize_unconstrained_position() (in module petitRADTRANS.retrieval.optimal_estimation) OptimizeResult (class in petitRADTRANS.retrieval.optimal_estimation) OrbaxCheckpointBackend (class in petitRADTRANS.sbi.training) orbit_semi_major_axis (petitRADTRANS.planet.Planet attribute) orbit_semi_major_axis_error_lower (petitRADTRANS.planet.Planet attribute) orbit_semi_major_axis_error_upper (petitRADTRANS.planet.Planet attribute) orbital_eccentricity (petitRADTRANS.planet.Planet attribute) orbital_eccentricity_error_lower (petitRADTRANS.planet.Planet attribute) orbital_eccentricity_error_upper (petitRADTRANS.planet.Planet attribute) orbital_inclination (petitRADTRANS.planet.Planet attribute) orbital_inclination_error_lower (petitRADTRANS.planet.Planet attribute) orbital_inclination_error_upper (petitRADTRANS.planet.Planet attribute) orbital_period (petitRADTRANS.planet.Planet attribute) orbital_period_error_lower (petitRADTRANS.planet.Planet attribute) orbital_period_error_upper (petitRADTRANS.planet.Planet attribute) ordered_items() (petitRADTRANS.retrieval.runtime.PhysicalParams method) ordered_names (petitRADTRANS.retrieval.runtime.PhysicalParams attribute) orders_outside (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) output() (in module petitRADTRANS.cli.eso_etc_cli) output_dim (petitRADTRANS.sbi.flows.CouplingConditioner attribute) (petitRADTRANS.sbi.flows.transforms.CouplingConditioner attribute) output_directory (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) (petitRADTRANS.retrieval.sampler.Sampler attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) output_file (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) output_projection (petitRADTRANS.sbi.encoders.DatasetSetAggregator attribute) (petitRADTRANS.sbi.encoders.PhotometryPointEncoder attribute) (petitRADTRANS.sbi.PhotometryPointEncoder attribute) output_root (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) outputfiles_basename (petitRADTRANS.retrieval.sampler.PymultinestSampler attribute) P P (in module petitRADTRANS.retrieval.sampler) p_unit (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) param_dictionary (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) Parameter (class in petitRADTRANS.retrieval.parameter) PARAMETER_ALIAS_MAP (in module petitRADTRANS.retrieval.parameter_aliases) parameter_diagnostics (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) parameter_dim (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveAffineTransform attribute) (petitRADTRANS.sbi.flows.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAffineFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveAffineTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalRationalQuadraticSplineCoupling attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalSplineFlow attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) parameter_layout (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.runtime.RetrievalRuntime attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) parameter_names (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) (petitRADTRANS.retrieval.multichain.CombinedNested attribute) (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler attribute) (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) (petitRADTRANS.retrieval.sampler.DynestySampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) (petitRADTRANS.retrieval.sampler.NumPyroSampler attribute) (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) (petitRADTRANS.sbi.PosteriorInformativenessReport attribute) (petitRADTRANS.sbi.SBITask property) (petitRADTRANS.sbi.task.SBITask property) parameter_sensitivity_norm (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) parameter_space (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) parameter_templates (petitRADTRANS.retrieval.runtime.ParameterLayout attribute) parameter_units (petitRADTRANS.retrieval.runtime.ModelContext attribute) ParameterLayout (class in petitRADTRANS.retrieval.runtime) parameters (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.flows.base.PosteriorBatch attribute) (petitRADTRANS.sbi.flows.PosteriorBatch attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.NoiseModelConfig attribute) (petitRADTRANS.sbi.PosteriorBatch attribute) (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) (petitRADTRANS.sbi.task.NoiseModelConfig attribute) particle_radius() (in module petitRADTRANS.radtrans_core.cloud_core) particle_radius_bisection_iteration() (in module petitRADTRANS.radtrans_core.cloud_core) particle_radius_midpoint() (in module petitRADTRANS.radtrans_core.cloud_core) partition_cpus() (in module petitRADTRANS.retrieval.multichain) passed (petitRADTRANS.sbi.inference.OODDiagnostic attribute) (petitRADTRANS.sbi.ObservationScaleReport attribute) (petitRADTRANS.sbi.OODDiagnostic attribute) (petitRADTRANS.sbi.validation.ObservationScaleReport attribute) patchy_clouds (petitRADTRANS.retrieval.runtime.ModelInputs attribute) path (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) path_input_data (petitRADTRANS.opacities.opacities.Opacity attribute) (petitRADTRANS.radtrans.Radtrans property) path_to_observations (petitRADTRANS.retrieval.data.Data attribute) patience (petitRADTRANS.sbi.EarlyStoppingConfig attribute) (petitRADTRANS.sbi.training.EarlyStoppingConfig attribute) payload (petitRADTRANS.sbi.compatibility.TaskFingerprint attribute) pc (in module petitRADTRANS.physical_constants) per_datapoint_keep_mask() (petitRADTRANS.retrieval.runtime.RetrievalRuntime method) PersistentPosteriorEstimator (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.base) petitRADTRANS module petitRADTRANS.__setup_meson_build module petitRADTRANS._input_data module petitRADTRANS.ccf module petitRADTRANS.ccf.ccf module petitRADTRANS.ccf.ccf_core module petitRADTRANS.chemistry module petitRADTRANS.chemistry.clouds module petitRADTRANS.chemistry.core module petitRADTRANS.chemistry.pre_calculated_chemistry module petitRADTRANS.chemistry.prt_easychem module petitRADTRANS.chemistry.prt_molmass module petitRADTRANS.chemistry.utils module petitRADTRANS.chemistry.vapour_pressures module petitRADTRANS.cli module petitRADTRANS.cli.eso_etc_cli module petitRADTRANS.cli.eso_skycalc_cli module petitRADTRANS.cli.prt_cli module petitRADTRANS.config module petitRADTRANS.config.configuration module petitRADTRANS.jax_dtype module petitRADTRANS.math module petitRADTRANS.opacities module petitRADTRANS.opacities.cia module petitRADTRANS.opacities.clouds module petitRADTRANS.opacities.continuum module petitRADTRANS.opacities.correlated_k_binning module petitRADTRANS.opacities.file_conversion module petitRADTRANS.opacities.hminus module petitRADTRANS.opacities.load module petitRADTRANS.opacities.opacities module petitRADTRANS.opacities.optical_depths module petitRADTRANS.opacities.rayleigh module petitRADTRANS.opacities.registry module petitRADTRANS.opacities.rosseland module petitRADTRANS.opacities.write module petitRADTRANS.physical_constants module petitRADTRANS.physics module petitRADTRANS.planet module petitRADTRANS.plotlib module petitRADTRANS.plotlib.plotlib module petitRADTRANS.plotlib.style module petitRADTRANS.radtrans module petitRADTRANS.radtrans_core module petitRADTRANS.radtrans_core.ck_mixing_ffi module petitRADTRANS.radtrans_core.cloud_core module petitRADTRANS.radtrans_core.interpolate_line_opacities module petitRADTRANS.radtrans_core.linalg module petitRADTRANS.radtrans_core.physics_core module petitRADTRANS.radtrans_core.radiative_transfer_core module petitRADTRANS.radtrans_core.rayleigh_scattering module petitRADTRANS.radtrans_core.spectrum_utils module petitRADTRANS.retrieval module petitRADTRANS.retrieval._mpi module petitRADTRANS.retrieval.covariance module petitRADTRANS.retrieval.data module petitRADTRANS.retrieval.dynesty_pool_helpers module petitRADTRANS.retrieval.log_likelihood module petitRADTRANS.retrieval.models module petitRADTRANS.retrieval.multichain module petitRADTRANS.retrieval.optimal_estimation module petitRADTRANS.retrieval.parameter module petitRADTRANS.retrieval.parameter_aliases module petitRADTRANS.retrieval.plotting module petitRADTRANS.retrieval.preparing module petitRADTRANS.retrieval.psis module petitRADTRANS.retrieval.retrieval module petitRADTRANS.retrieval.retrieval_config module petitRADTRANS.retrieval.runtime module petitRADTRANS.retrieval.sampler module petitRADTRANS.retrieval.utils module petitRADTRANS.sbi module petitRADTRANS.sbi.artifacts module petitRADTRANS.sbi.calibration module petitRADTRANS.sbi.compatibility module petitRADTRANS.sbi.config module petitRADTRANS.sbi.dataset module petitRADTRANS.sbi.encoders module petitRADTRANS.sbi.flows module petitRADTRANS.sbi.flows.base module petitRADTRANS.sbi.flows.cube module petitRADTRANS.sbi.flows.matching module petitRADTRANS.sbi.flows.objectives module petitRADTRANS.sbi.flows.posterior module petitRADTRANS.sbi.flows.refinement module petitRADTRANS.sbi.flows.regularization module petitRADTRANS.sbi.flows.transforms module petitRADTRANS.sbi.inference module petitRADTRANS.sbi.observation module petitRADTRANS.sbi.plotting module petitRADTRANS.sbi.preprocessing module petitRADTRANS.sbi.simulator module petitRADTRANS.sbi.task module petitRADTRANS.sbi.training module petitRADTRANS.sbi.validation module petitRADTRANS.sbi.workflow module petitRADTRANS.slurm_runs module petitRADTRANS.slurm_runs.sbatch module petitRADTRANS.slurm_runs.utils module petitRADTRANS.spectral_model module petitRADTRANS.stellar_spectra module petitRADTRANS.stellar_spectra.phoenix module petitRADTRANS.synthetic_photometry module petitRADTRANS.temperature_profiles module petitRADTRANS.temperature_profiles.gradient module petitRADTRANS.temperature_profiles.guillot module petitRADTRANS.temperature_profiles.isothermal module petitRADTRANS.temperature_profiles.madhusudhan module petitRADTRANS.temperature_profiles.molliere module petitRADTRANS.temperature_profiles.power_law module petitRADTRANS.temperature_profiles.spline module petitRADTRANS.utils module petitRADTRANS.validation module petitradtrans_config_parser (in module petitRADTRANS.config) (in module petitRADTRANS.config.configuration) petitradtrans_version (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) PetitradtransConfigParser (class in petitRADTRANS.config.configuration) pgrid (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) phase2longitude() (in module petitRADTRANS.math) phoenix_star_table (in module petitRADTRANS.stellar_spectra.phoenix) PhoenixStarTable (class in petitRADTRANS.stellar_spectra.phoenix) photometric_bin_edges (petitRADTRANS.retrieval.data.PhotometryData attribute) photometric_transformation_function (petitRADTRANS.retrieval.data.PhotometryData attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) PHOTOMETRY (petitRADTRANS.sbi.observation.ObservationModality attribute) (petitRADTRANS.sbi.ObservationModality attribute) photometry_embedding_dim (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.EncoderConfig attribute) (petitRADTRANS.sbi.EncoderConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) photometry_encoder (petitRADTRANS.sbi.encoders.ObservationEncoder attribute) (petitRADTRANS.sbi.ObservationEncoder attribute) PhotometryData (class in petitRADTRANS.retrieval.data) PhotometryPointEncoder (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.encoders) physical_params_from_cube() (petitRADTRANS.retrieval.runtime.ParameterLayout method) physical_params_from_free_values() (petitRADTRANS.retrieval.runtime.ParameterLayout method) physical_params_from_matrix() (petitRADTRANS.retrieval.runtime.ParameterLayout method) physical_params_from_unconstrained() (petitRADTRANS.retrieval.runtime.ParameterLayout method) physical_params_from_vector() (petitRADTRANS.retrieval.runtime.ParameterLayout method) PhysicalParams (class in petitRADTRANS.retrieval.runtime) planck_function_cm() (in module petitRADTRANS.physics) planck_function_hz() (in module petitRADTRANS.physics) planck_function_hz_temperature_derivative() (in module petitRADTRANS.physics) Planet (class in petitRADTRANS.planet) planet_radius (petitRADTRANS.retrieval.runtime.ModelInputs attribute) planet_stellar_radius_ratio (petitRADTRANS.planet.Planet attribute) planet_stellar_radius_ratio_error_lower (petitRADTRANS.planet.Planet attribute) planet_stellar_radius_ratio_error_upper (petitRADTRANS.planet.Planet attribute) plot_abundances() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_all() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_cloud_condensation_curves() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_contribution() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_corner() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_data() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_diagnostics() (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.Sampler method) plot_dpi (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) plot_in_corner (petitRADTRANS.retrieval.parameter.Parameter attribute) plot_local_sensitivity_fisher_correlations() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_local_sensitivity_jacobians() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_local_sensitivity_singular_values() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_multiple_posteriors() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_opacity_contributions() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_planet_context() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_posterior() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_posterior_corner() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_posterior_marginals() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_posterior_predictive_report() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_pt() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_radtrans_opacities() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_result_corner() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.plotlib) plot_sampled() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plot_sbc_rank_histograms() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) plot_spectra() (petitRADTRANS.retrieval.plotting.RetrievalPlotter method) (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) plotter (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) plt (in module petitRADTRANS.retrieval.sampler) point_mlp (petitRADTRANS.sbi.encoders.PhotometryPointEncoder attribute) (petitRADTRANS.sbi.PhotometryPointEncoder attribute) polyfit() (in module petitRADTRANS.retrieval.preparing) pooled (petitRADTRANS.retrieval.multichain.CombinedMCMC attribute) post_run() (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.PymultinestSampler method) (petitRADTRANS.retrieval.sampler.Sampler method) posterior (petitRADTRANS.sbi.AmortizedRetrievalResult attribute) (petitRADTRANS.sbi.inference.AmortizedRetrievalResult attribute) posterior_estimator (petitRADTRANS.sbi.AmortizedRetrieval attribute) (petitRADTRANS.sbi.inference.AmortizedRetrieval attribute) posterior_iqr (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) posterior_mean (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) posterior_means (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) posterior_median (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) POSTERIOR_METADATA_SCHEMA_VERSION (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) POSTERIOR_MODEL (petitRADTRANS.sbi.artifacts.ArtifactRole attribute) posterior_predictive (petitRADTRANS.sbi.AmortizedRetrievalResult attribute) (petitRADTRANS.sbi.inference.AmortizedRetrievalResult attribute) posterior_predictive() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) posterior_predictive_report_from_samples() (in module petitRADTRANS.sbi.calibration) posterior_sample_spectra (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) posterior_std (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) posterior_to_local_sigma_ratio (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) PosteriorBatch (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.base) PosteriorEstimator (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.base) PosteriorInformativenessReport (class in petitRADTRANS.sbi) PosteriorPredictiveReport (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.calibration) PosteriorSamples (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.base) power_law_opacity_350nm (petitRADTRANS.retrieval.runtime.ModelInputs attribute) power_law_opacity_coefficient (petitRADTRANS.retrieval.runtime.ModelInputs attribute) power_law_profile_emission (in module petitRADTRANS.retrieval.models) power_law_profile_emission() (in module petitRADTRANS.retrieval.models) power_law_profile_transmission (in module petitRADTRANS.retrieval.models) power_law_profile_transmission() (in module petitRADTRANS.retrieval.models) power_law_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.power_law) power_load() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) power_set() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) power_update() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) pre_calculated_equilibrium_chemistry_table (in module petitRADTRANS.chemistry.pre_calculated_chemistry) PreCalculatedEquilibriumChemistryTable (class in petitRADTRANS.chemistry.pre_calculated_chemistry) predictive_mean (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) predictive_std (petitRADTRANS.sbi.calibration.PosteriorPredictiveReport attribute) (petitRADTRANS.sbi.PosteriorPredictiveReport attribute) prepare() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler class method) (petitRADTRANS.retrieval.sampler.BlackJAXHMCSampler class method) (petitRADTRANS.retrieval.sampler.BlackJAXNUTSSampler class method) (petitRADTRANS.retrieval.sampler.DynestySampler class method) (petitRADTRANS.retrieval.sampler.JAXNSSampler class method) (petitRADTRANS.retrieval.sampler.NumPyroHMCSampler class method) (petitRADTRANS.retrieval.sampler.NumPyroNUTSSampler class method) (petitRADTRANS.retrieval.sampler.PymultinestSampler class method) (petitRADTRANS.retrieval.sampler.Sampler class method) (petitRADTRANS.retrieval.sampler.UltranestSampler class method) prepare_feautrier_system_lm() (in module petitRADTRANS.radtrans_core.linalg) prepare_observation_blocks() (petitRADTRANS.sbi.AmortizedRetrieval method) (petitRADTRANS.sbi.inference.AmortizedRetrieval method) preparing_pipeline() (petitRADTRANS.spectral_model.SpectralModel static method) preprocessing_metadata (petitRADTRANS.sbi.AmortizedRetrieval attribute) (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.dataset.GeneratedSimulationDataset attribute) (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.inference.AmortizedRetrieval attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) preprocessing_metadata_payload (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) preprocessing_version (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) pressures (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.runtime.ModelInputs attribute) (petitRADTRANS.retrieval.runtime.ModelResult attribute) PreStackedObservations (class in petitRADTRANS.sbi.observation) pretty_print() (petitRADTRANS.retrieval.sampler.PymultinestSampler method) pretty_print_results() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler method) (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.UltranestSampler method) print_log_likelihood_for_debugging (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) prior() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) prior_func (petitRADTRANS.retrieval.sampler.Sampler attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) prior_function (petitRADTRANS.retrieval.parameter.RetrievalParameter attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) prior_model_jaxns() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) prior_parameters (petitRADTRANS.retrieval.parameter.RetrievalParameter attribute) prior_sample (petitRADTRANS.retrieval.parameter.Parameter attribute) prior_transform_inplace() (petitRADTRANS.retrieval.runtime.ParameterLayout method) prior_transform_numpy() (petitRADTRANS.retrieval.runtime.ParameterLayout method) prior_type (petitRADTRANS.retrieval.parameter.RetrievalParameter attribute) prior_ultranest() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) prior_ultranest_func (petitRADTRANS.retrieval.sampler.SamplerContext attribute) process_spectrum_pipeline() (in module petitRADTRANS.retrieval.utils) PROCESSES (petitRADTRANS.retrieval.multichain.ChainExecution attribute) ProcessRunResult (class in petitRADTRANS.retrieval.multichain) projected_obliquity (petitRADTRANS.planet.Planet attribute) projected_obliquity_error_lower (petitRADTRANS.planet.Planet attribute) projected_obliquity_error_upper (petitRADTRANS.planet.Planet attribute) ProposalSampler (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.simulator) prt_default_colour_cycle (in module petitRADTRANS.plotlib.style) prt_plot_style (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) prt_resolving_space() (in module petitRADTRANS.math) psisloo() (in module petitRADTRANS.retrieval.psis) psislw() (in module petitRADTRANS.retrieval.psis) put_into_dict() (petitRADTRANS.retrieval.parameter.RetrievalParameter method) pymultinest (in module petitRADTRANS.retrieval.sampler) PymultinestSampler (class in petitRADTRANS.retrieval.sampler) R R (in module petitRADTRANS.physical_constants) r_earth (in module petitRADTRANS.physical_constants) r_jup (in module petitRADTRANS.physical_constants) r_jup_mean (in module petitRADTRANS.physical_constants) r_sun (in module petitRADTRANS.physical_constants) ra (petitRADTRANS.planet.Planet attribute) radial_velocity_semi_amplitude (petitRADTRANS.planet.Planet attribute) radial_velocity_semi_amplitude_error_lower (petitRADTRANS.planet.Planet attribute) radial_velocity_semi_amplitude_error_upper (petitRADTRANS.planet.Planet attribute) radius (petitRADTRANS.planet.Planet attribute) radius_error_lower (petitRADTRANS.planet.Planet attribute) radius_error_upper (petitRADTRANS.planet.Planet attribute) radius_grid (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable attribute) Radtrans (class in petitRADTRANS.radtrans) radtrans (petitRADTRANS.retrieval.runtime.ModelContext attribute) radtrans_grid (petitRADTRANS.retrieval.data.Data attribute) radtrans_object (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) raise_for_incompatibility() (petitRADTRANS.sbi.compatibility.CompatibilityReport method) random (in module petitRADTRANS.retrieval.sampler) rank (in module petitRADTRANS.opacities.opacities) (in module petitRADTRANS.retrieval._mpi) rank_histogram_counts (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) ranks (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) raw_results (petitRADTRANS.retrieval.sampler.DynestySampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) rayleigh_species (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) read_hdf5() (petitRADTRANS.opacities.correlated_k_binning.Ktable method) read_json() (in module petitRADTRANS.sbi.artifacts) read_posterior_metadata() (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) read_raw_spectral_split() (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader method) (petitRADTRANS.sbi.NormalizedObservationDatasetReader method) read_split() (petitRADTRANS.sbi.dataset.HDF5StoredSimulationDataset method) ReadFilter (class in petitRADTRANS.synthetic_photometry) rebin() (in module petitRADTRANS.opacities.correlated_k_binning) rebin_ck_line_opacities() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.load) rebin_ind_weights() (in module petitRADTRANS.opacities.correlated_k_binning) rebin_multiple_ck_line_opacities() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.load) rebin_spectrum() (in module petitRADTRANS.radtrans_core.spectrum_utils) (petitRADTRANS.spectral_model.SpectralModel static method) rebin_spectrum_bin() (in module petitRADTRANS.radtrans_core.spectrum_utils) rebin_star_spectrum() (in module petitRADTRANS.stellar_spectra.phoenix) rebinning_interpolation() (in module petitRADTRANS.radtrans_core.spectrum_utils) reference (petitRADTRANS.planet.Planet attribute) reference_gravity (petitRADTRANS.planet.Planet attribute) reference_gravity2mass() (petitRADTRANS.planet.Planet static method) (petitRADTRANS.spectral_model.SpectralModel static method) reference_gravity2mass_jax() (in module petitRADTRANS.planet) reference_gravity2radius() (petitRADTRANS.planet.Planet static method) reference_gravity2radius_jax() (in module petitRADTRANS.planet) reference_gravity_error_lower (petitRADTRANS.planet.Planet attribute) reference_gravity_error_upper (petitRADTRANS.planet.Planet attribute) reference_pressure (petitRADTRANS.planet.Planet attribute) (petitRADTRANS.retrieval.runtime.ModelInputs attribute) refine_posterior_on_observation() (in module petitRADTRANS.sbi.flows.refinement) (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) refinement (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) RefinementConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) refresh_covariance_bookkeeping() (petitRADTRANS.retrieval.data.Data method) register() (petitRADTRANS.sbi.artifacts.ArtifactRegistry method) (petitRADTRANS.sbi.artifacts.FileArtifactRegistry method) register_posterior_estimator() (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) RegisteredArtifact (class in petitRADTRANS.sbi.artifacts) remove_mask() (in module petitRADTRANS.utils) (petitRADTRANS.spectral_model.SpectralModel static method) remove_noisy_wavelength_channels() (in module petitRADTRANS.retrieval.preparing) remove_species_lines() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) remove_telluric_lines_fit() (in module petitRADTRANS.retrieval.preparing) remove_telluric_lines_mean() (in module petitRADTRANS.retrieval.preparing) remove_throughput_fit() (in module petitRADTRANS.retrieval.preparing) remove_throughput_mean() (in module petitRADTRANS.retrieval.preparing) remove_zeros() (petitRADTRANS.opacities.correlated_k_binning.Data_table method) render_chain_worker_script() (in module petitRADTRANS.retrieval.multichain) render_slurm_array_scripts() (in module petitRADTRANS.retrieval.multichain) repair() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) report_and_save_map_warmup() (in module petitRADTRANS.retrieval.optimal_estimation) representative_points (petitRADTRANS.sbi.calibration.LocalSensitivityReport attribute) (petitRADTRANS.sbi.LocalSensitivityReport attribute) request_file (in module petitRADTRANS.cli.eso_etc_cli) request_file_base_dict (in module petitRADTRANS.cli.eso_etc_cli) resample_during_training (petitRADTRANS.sbi.NoiseModelConfig attribute) (petitRADTRANS.sbi.task.NoiseModelConfig attribute) resolve() (petitRADTRANS.sbi.artifacts.ArtifactRegistry method) (petitRADTRANS.sbi.artifacts.FileArtifactRegistry method) resolve_chain_execution() (in module petitRADTRANS.retrieval.multichain) resolve_checkpoint_backend() (in module petitRADTRANS.sbi.training) resolve_cloud_base_pressures() (in module petitRADTRANS.chemistry.core) resolve_estimator_family_from_metadata() (in module petitRADTRANS.sbi.flows) (in module petitRADTRANS.sbi.flows.base) resolve_latest_completed_run() (in module petitRADTRANS.sbi.artifacts) resolve_latest_posterior_run() (in module petitRADTRANS.sbi.artifacts) resolve_posterior_dir() (in module petitRADTRANS.sbi.artifacts) resolve_run_manifest() (in module petitRADTRANS.sbi.artifacts) resolving_power_str (petitRADTRANS.retrieval.data.Data attribute) resolving_space() (in module petitRADTRANS.math) restore() (petitRADTRANS.sbi.training.CheckpointBackend method) (petitRADTRANS.sbi.training.EquinoxCheckpointBackend method) (petitRADTRANS.sbi.training.OrbaxCheckpointBackend method) results (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSampler attribute) (petitRADTRANS.retrieval.sampler.DynestySampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) (petitRADTRANS.retrieval.sampler.NumPyroSampler attribute) (petitRADTRANS.retrieval.sampler.UltranestSampler attribute) resume_from_checkpoint (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) resume_predictive_checkpoints (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) Retrieval (class in petitRADTRANS.retrieval) (class in petitRADTRANS.retrieval.retrieval) retrieval_config (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) retrieval_config_digest (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) retrieval_model_generating_function() (petitRADTRANS.spectral_model.SpectralModel static method) retrieval_name (petitRADTRANS.retrieval.multichain.ChainSpec attribute) (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) (petitRADTRANS.retrieval.sampler.Sampler attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) RetrievalConfig (class in petitRADTRANS.retrieval) (class in petitRADTRANS.retrieval.retrieval_config) RetrievalParameter (class in petitRADTRANS.retrieval.parameter) RetrievalPlotter (class in petitRADTRANS.retrieval.plotting) RetrievalRuntime (class in petitRADTRANS.retrieval.runtime) return_abundances (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_cloud_contribution (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_cloud_mass_fraction() (in module petitRADTRANS.chemistry.clouds) return_contribution (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_opacities (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_photosphere_radius (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_radius_hydrostatic_equilibrium (petitRADTRANS.retrieval.runtime.ModelContext attribute) return_rosseland_optical_depths (petitRADTRANS.retrieval.runtime.ModelContext attribute) rhat_threshold (petitRADTRANS.retrieval.multichain.MCMCChainCombiner attribute) rm_molec() (in module petitRADTRANS.opacities.correlated_k_binning) RobustEllipsoidRegion (in module petitRADTRANS.retrieval.sampler) role (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) root_directory (petitRADTRANS.sbi.artifacts.FileArtifactRegistry attribute) ROUND_ROBIN (petitRADTRANS.sbi.dataset.SplitSamplingPolicy attribute) run() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) run_chains_in_processes() (in module petitRADTRANS.retrieval.multichain) run_label (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) run_legacy_model_adapter() (in module petitRADTRANS.retrieval.models) run_mode (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) run_multichain() (petitRADTRANS.retrieval.Retrieval class method) (petitRADTRANS.retrieval.retrieval.Retrieval class method) run_retrieval() (petitRADTRANS.spectral_model.SpectralModel static method) run_runtime_model_adapter() (in module petitRADTRANS.retrieval.models) run_sampler() (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler method) (petitRADTRANS.retrieval.sampler.BlackJAXSampler method) (petitRADTRANS.retrieval.sampler.DynestySampler method) (petitRADTRANS.retrieval.sampler.JAXNSSampler method) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler method) (petitRADTRANS.retrieval.sampler.NumPyroSampler method) (petitRADTRANS.retrieval.sampler.PymultinestSampler method) (petitRADTRANS.retrieval.sampler.Sampler method) (petitRADTRANS.retrieval.sampler.UltranestSampler method) run_sbi() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.workflow) run_single_chain() (petitRADTRANS.retrieval.Retrieval class method) (petitRADTRANS.retrieval.retrieval.Retrieval class method) running_mean() (in module petitRADTRANS.math) runtime (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) (petitRADTRANS.sbi.simulator.BatchedSimulator attribute) RuntimeSimulator (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.simulator) S s_earth (in module petitRADTRANS.physical_constants) sample() (petitRADTRANS.sbi.ProposalSampler method) (petitRADTRANS.sbi.simulator.ProposalSampler method) sample_effective_temperature() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) sample_matrix (petitRADTRANS.retrieval.multichain.CombinedNested attribute) (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) sample_parameters() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.Simulator method) (petitRADTRANS.sbi.simulator.BatchedSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.Simulator method) sample_posterior() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.PosteriorEstimator method) (petitRADTRANS.sbi.PosteriorEstimator method) Sampler (class in petitRADTRANS.retrieval.sampler) sampler (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.DynestySampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) SAMPLER_DISPATCH (in module petitRADTRANS.retrieval.retrieval) sampler_family() (in module petitRADTRANS.retrieval.multichain) sampler_type (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) SamplerContext (class in petitRADTRANS.retrieval.sampler) samples (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) (petitRADTRANS.sbi.flows.base.PosteriorSamples attribute) (petitRADTRANS.sbi.flows.PosteriorSamples attribute) (petitRADTRANS.sbi.PosteriorSamples attribute) sampling_method (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) save() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) (petitRADTRANS.opacities.opacities.Opacity method) (petitRADTRANS.planet.Planet method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.base.PosteriorEstimator method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.PosteriorEstimator method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.PosteriorEstimator method) (petitRADTRANS.sbi.training.CheckpointBackend method) (petitRADTRANS.sbi.training.EquinoxCheckpointBackend method) (petitRADTRANS.sbi.training.OrbaxCheckpointBackend method) (petitRADTRANS.spectral_model.SpectralModel method) save_backend_state() (petitRADTRANS.sbi.ConditionalFlowPosterior method) (petitRADTRANS.sbi.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior method) (petitRADTRANS.sbi.flows.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.matching.FlowMatchingPosterior method) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator method) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior method) (petitRADTRANS.sbi.PersistentPosteriorEstimator method) save_best_fit_outputs() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) save_best_fit_outputs_external_variability() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) save_checkpoint_guardrails (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) save_configuration() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) save_mass_fractions() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) save_parameters() (petitRADTRANS.spectral_model.SpectralModel static method) save_predictive_spectrum() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.artifacts) save_results (in module petitRADTRANS.retrieval.sampler) save_validation_plots() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.plotting) save_volume_mixing_ratios() (petitRADTRANS.retrieval.Retrieval method) (petitRADTRANS.retrieval.retrieval.Retrieval method) savez_compressed_record() (in module petitRADTRANS.utils) savgol_filter() (in module petitRADTRANS.math) savgol_filter_spectrum() (in module petitRADTRANS.radtrans_core.spectrum_utils) sbc_normalized_rank_error (petitRADTRANS.sbi.PosteriorInformativenessReport attribute) SBIConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) SBITask (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.task) SBITrainer (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.training) scale_and_inflate_uncertainties() (petitRADTRANS.retrieval.data.Data method) scale_check (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) scale_check_max_orders_outside (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) scale_check_split (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) scale_factor (petitRADTRANS.retrieval.data.Data attribute) scale_flux (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) scale_head (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) scale_spectrum() (petitRADTRANS.spectral_model.SpectralModel static method) scale_uncertainties (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) scaling (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) scattering_in_emission (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) score (petitRADTRANS.sbi.inference.OODDiagnostic attribute) (petitRADTRANS.sbi.OODDiagnostic attribute) seed (petitRADTRANS.retrieval.multichain.ChainSpec attribute) (petitRADTRANS.retrieval.multichain.NestedChainCombiner attribute) (petitRADTRANS.retrieval.sampler.JAXNSSampler attribute) (petitRADTRANS.retrieval.sampler.JAXNSShardedStaticNestedSampler attribute) (petitRADTRANS.retrieval.sampler.PymultinestSampler attribute) (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.NoiseModelConfig attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.SBIConfig attribute) (petitRADTRANS.sbi.task.NoiseModelConfig attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) select_default_file() (in module petitRADTRANS._input_data) select_spectral_range() (petitRADTRANS.opacities.correlated_k_binning.Spectral_object method) semi_major_axis_stellar_radius_ratio (petitRADTRANS.planet.Planet attribute) semi_major_axis_stellar_radius_ratio_error_lower (petitRADTRANS.planet.Planet attribute) semi_major_axis_stellar_radius_ratio_error_upper (petitRADTRANS.planet.Planet attribute) SEQUENTIAL (petitRADTRANS.retrieval.multichain.ChainExecution attribute) (petitRADTRANS.sbi.dataset.SplitSamplingPolicy attribute) serialize_metadata() (petitRADTRANS.retrieval.runtime.ParameterLayout method) serialize_ood_diagnostic() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) set_continuum_opacities() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) set_default_file() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) set_input_data_path() (petitRADTRANS.config.configuration.PetitradtransConfigParser method) set_line_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) set_mesh (in module petitRADTRANS.retrieval.sampler) set_param() (petitRADTRANS.retrieval.parameter.Parameter method) set_petitradtrans_plot_style() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) set_prior() (petitRADTRANS.retrieval.parameter.Parameter method) set_rayleigh_species() (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig method) (petitRADTRANS.retrieval.RetrievalConfig method) setup_clouds() (in module petitRADTRANS.chemistry.clouds) setup_clouds_from_legacy_dict() (in module petitRADTRANS.chemistry.clouds) setup_exoatmos() (in module petitRADTRANS.chemistry.prt_easychem) setup_simple_clouds_hazes() (in module petitRADTRANS.chemistry.clouds) setup_simple_clouds_hazes_from_legacy_dict() (in module petitRADTRANS.chemistry.clouds) shard_map (in module petitRADTRANS.retrieval.sampler) SHARDED (petitRADTRANS.retrieval.multichain.ChainExecution attribute) ShardedStaticNestedSampler (in module petitRADTRANS.retrieval.sampler) shift_wavelengths() (petitRADTRANS.spectral_model.SpectralModel static method) shift_wavelengths_by_radial_velocity() (in module petitRADTRANS.physics) shuffle_train (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) SHUFFLED (petitRADTRANS.sbi.dataset.SplitSamplingPolicy attribute) sigma (in module petitRADTRANS.physical_constants) sigma2bayes_factor() (in module petitRADTRANS.math) sigma_lnorm (petitRADTRANS.retrieval.runtime.ModelInputs attribute) simplify_species_list() (in module petitRADTRANS.chemistry.utils) simulate_batch() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.Simulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.Simulator method) simulate_from_parameters() (petitRADTRANS.sbi.RuntimeSimulator method) (petitRADTRANS.sbi.Simulator method) (petitRADTRANS.sbi.simulator.BatchedSimulator method) (petitRADTRANS.sbi.simulator.RuntimeSimulator method) (petitRADTRANS.sbi.simulator.Simulator method) simulate_observations_batched() (petitRADTRANS.sbi.simulator.SimulationRuntime method) simulate_observations_scalar() (petitRADTRANS.sbi.simulator.SimulationRuntime method) simulation_based_calibration_report() (in module petitRADTRANS.sbi.calibration) simulation_batch_size (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) simulation_config (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) SIMULATION_DATASET (petitRADTRANS.sbi.artifacts.ArtifactRole attribute) SimulationBasedCalibrationReport (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.calibration) SimulationBatch (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.simulator) SimulationConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.task) SimulationDatasetManifest (class in petitRADTRANS.sbi.dataset) SimulationDatasetStore (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.dataset) SimulationDatasetWriter (class in petitRADTRANS.sbi.dataset) SimulationRuntime (class in petitRADTRANS.sbi.simulator) Simulator (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.simulator) simulator (petitRADTRANS.sbi.AmortizedRetrieval attribute) (petitRADTRANS.sbi.inference.AmortizedRetrieval attribute) singular_values (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) solid_structure (petitRADTRANS.opacities.opacities.Opacity attribute) solid_structure_id (petitRADTRANS.opacities.opacities.Opacity attribute) solve_feautrier_system_lm() (in module petitRADTRANS.radtrans_core.linalg) solve_tridiagonal_pcr() (in module petitRADTRANS.radtrans_core.linalg) source (petitRADTRANS.opacities.opacities.Opacity attribute) source_name (petitRADTRANS.retrieval.runtime.ModelGroupState attribute) species (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) species_base_name (petitRADTRANS.opacities.opacities.Opacity attribute) species_cloud_info (petitRADTRANS.opacities.opacities.Opacity attribute) species_full_name (petitRADTRANS.opacities.opacities.Opacity attribute) species_isotopologue_name (petitRADTRANS.opacities.opacities.Opacity attribute) species_list (petitRADTRANS.opacities.opacities.Opacity attribute) spectral_modification_functions_map (petitRADTRANS.spectral_model.SpectralModel attribute) Spectral_object (class in petitRADTRANS.opacities.correlated_k_binning) spectral_sampling (petitRADTRANS.opacities.opacities.Opacity attribute) spectral_sampling_type (petitRADTRANS.opacities.opacities.Opacity attribute) SpectralConvolutionEncoder (class in petitRADTRANS.sbi.encoders) SpectralModel (class in petitRADTRANS.spectral_model) spectrum (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ModelResult attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) SPECTRUM (petitRADTRANS.sbi.observation.ObservationModality attribute) (petitRADTRANS.sbi.ObservationModality attribute) spectrum_embedding_dim (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.EncoderConfig attribute) (petitRADTRANS.sbi.EncoderConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spectrum_encoder (petitRADTRANS.sbi.encoders.ObservationEncoder attribute) (petitRADTRANS.sbi.ObservationEncoder attribute) spectrum_encoder_type (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.EncoderConfig attribute) (petitRADTRANS.sbi.EncoderConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spectrum_is_valid() (petitRADTRANS.retrieval.runtime.ModelResult method) spectrum_to_flux() (petitRADTRANS.synthetic_photometry.SyntheticPhotometry method) spectrum_x_label (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) spectrum_y_label (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) spline_bound (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) spline_derivative_regularization_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_entropy_floor (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_entropy_regularization_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_max_derivative_target (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_min_bin_ratio_target (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_min_derivative_target (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) spline_small_bin_regularization_weight (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.objectives._PosteriorModel attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) split_cloud_info() (petitRADTRANS.opacities.opacities.Opacity class method) split_input_data_path() (in module petitRADTRANS._input_data) split_species_all_info() (petitRADTRANS.opacities.opacities.Opacity class method) split_species_charge() (petitRADTRANS.opacities.opacities.Opacity class method) split_species_cloud_info() (petitRADTRANS.opacities.opacities.Opacity static method) split_species_source() (petitRADTRANS.opacities.opacities.Opacity class method) split_species_spectral_info() (petitRADTRANS.opacities.opacities.Opacity class method) split_spectral_info() (petitRADTRANS.opacities.opacities.Opacity class method) split_spectral_sampling_info() (petitRADTRANS.opacities.opacities.Opacity class method) split_wavelength_range_info() (petitRADTRANS.opacities.opacities.Opacity class method) splits (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) SplitSamplingPolicy (class in petitRADTRANS.sbi.dataset) SQRT2 (in module petitRADTRANS.retrieval.utils) squared_exponential_kernel() (in module petitRADTRANS.retrieval.covariance) stability (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) StabilityConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) stable_calibration_coverage_error_threshold (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) stable_cube_edge_hit_rate_threshold (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) stable_inverse_forward_logdet_closure_max_abs_error_threshold (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) stable_inverse_forward_max_abs_error_threshold (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) stacked_blocks (petitRADTRANS.sbi.observation.PreStackedObservations attribute) standard_number_density_for_refractive_index (in module petitRADTRANS.physical_constants) star_age (petitRADTRANS.planet.Planet attribute) star_age_error_lower (petitRADTRANS.planet.Planet attribute) star_age_error_upper (petitRADTRANS.planet.Planet attribute) star_density (petitRADTRANS.planet.Planet attribute) star_density_error_lower (petitRADTRANS.planet.Planet attribute) star_density_error_upper (petitRADTRANS.planet.Planet attribute) star_effective_temperature (petitRADTRANS.planet.Planet attribute) star_effective_temperature_error_lower (petitRADTRANS.planet.Planet attribute) star_effective_temperature_error_upper (petitRADTRANS.planet.Planet attribute) star_luminosity (petitRADTRANS.planet.Planet attribute) star_luminosity_error_lower (petitRADTRANS.planet.Planet attribute) star_luminosity_error_upper (petitRADTRANS.planet.Planet attribute) star_mass (petitRADTRANS.planet.Planet attribute) star_mass_error_lower (petitRADTRANS.planet.Planet attribute) star_mass_error_upper (petitRADTRANS.planet.Planet attribute) star_metallicity (petitRADTRANS.planet.Planet attribute) star_metallicity_error_lower (petitRADTRANS.planet.Planet attribute) star_metallicity_error_upper (petitRADTRANS.planet.Planet attribute) star_planck() (in module petitRADTRANS.radtrans_core.physics_core) star_radial_velocity (petitRADTRANS.planet.Planet attribute) star_radial_velocity_error_lower (petitRADTRANS.planet.Planet attribute) star_radial_velocity_error_upper (petitRADTRANS.planet.Planet attribute) star_radius (petitRADTRANS.planet.Planet attribute) star_radius_error_lower (petitRADTRANS.planet.Planet attribute) star_radius_error_upper (petitRADTRANS.planet.Planet attribute) star_reference (petitRADTRANS.planet.Planet attribute) star_reference_gravity (petitRADTRANS.planet.Planet attribute) star_reference_gravity_error_lower (petitRADTRANS.planet.Planet attribute) star_reference_gravity_error_upper (petitRADTRANS.planet.Planet attribute) star_rotational_period (petitRADTRANS.planet.Planet attribute) star_rotational_period_error_lower (petitRADTRANS.planet.Planet attribute) star_rotational_period_error_upper (petitRADTRANS.planet.Planet attribute) star_rotational_velocity (petitRADTRANS.planet.Planet attribute) star_rotational_velocity_error_lower (petitRADTRANS.planet.Planet attribute) star_rotational_velocity_error_upper (petitRADTRANS.planet.Planet attribute) star_spectral_type (petitRADTRANS.planet.Planet attribute) start_logdensities (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) startup_scale_check (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) static_items (petitRADTRANS.retrieval.runtime.PhysicalParams attribute) stellar_radius (petitRADTRANS.retrieval.runtime.ModelInputs attribute) stepped_profile() (in module petitRADTRANS.chemistry.utils) storage_uri (petitRADTRANS.sbi.dataset.HDF5StoredSimulationDataset attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) store_per_datapoint_log_likelihood (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) sub_path (petitRADTRANS.opacities.opacities.Opacity attribute) subtract_continuum (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) succeeded_chain_ids (petitRADTRANS.retrieval.multichain.ProcessRunResult attribute) sumlogs() (in module petitRADTRANS.retrieval.psis) summarize_posterior_contraction() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) summarize_posterior_samples() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) summarize_predictive_report() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) summarize_training_diagnostics() (in module petitRADTRANS.sbi) (in module petitRADTRANS.sbi.calibration) SyntheticPhotometry (class in petitRADTRANS.synthetic_photometry) sysrem() (in module petitRADTRANS.retrieval.preparing) system_apparent_magnitude_j (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_j_error_lower (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_j_error_upper (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_k (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_k_error_lower (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_k_error_upper (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_v (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_v_error_lower (petitRADTRANS.planet.Planet attribute) system_apparent_magnitude_v_error_upper (petitRADTRANS.planet.Planet attribute) system_distance (petitRADTRANS.planet.Planet attribute) system_distance_error_lower (petitRADTRANS.planet.Planet attribute) system_distance_error_upper (petitRADTRANS.planet.Planet attribute) system_moon_number (petitRADTRANS.planet.Planet attribute) system_planet_number (petitRADTRANS.planet.Planet attribute) system_proper_motion (petitRADTRANS.planet.Planet attribute) system_proper_motion_dec (petitRADTRANS.planet.Planet attribute) system_proper_motion_dec_error_lower (petitRADTRANS.planet.Planet attribute) system_proper_motion_dec_error_upper (petitRADTRANS.planet.Planet attribute) system_proper_motion_error_lower (petitRADTRANS.planet.Planet attribute) system_proper_motion_error_upper (petitRADTRANS.planet.Planet attribute) system_proper_motion_ra (petitRADTRANS.planet.Planet attribute) system_proper_motion_ra_error_lower (petitRADTRANS.planet.Planet attribute) system_proper_motion_ra_error_upper (petitRADTRANS.planet.Planet attribute) system_star_number (petitRADTRANS.planet.Planet attribute) T target_observations (petitRADTRANS.sbi.dataset.NormalizedObservationDatasetReader attribute) (petitRADTRANS.sbi.NormalizedObservationDatasetReader attribute) task (petitRADTRANS.sbi.AmortizedRetrieval attribute) (petitRADTRANS.sbi.inference.AmortizedRetrieval attribute) (petitRADTRANS.sbi.Simulator attribute) (petitRADTRANS.sbi.simulator.Simulator attribute) task_fingerprint (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.SBITask property) (petitRADTRANS.sbi.task.SBITask property) task_metadata (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) task_name (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) task_version (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.SBITask attribute) (petitRADTRANS.sbi.task.SBITask attribute) TaskCompatibilityError, [1] TaskFingerprint (class in petitRADTRANS.sbi.compatibility) TaskPreprocessingMetadata (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.preprocessing) temperature_curvature_prior() (in module petitRADTRANS.temperature_profiles.spline) temperatures (petitRADTRANS.chemistry.pre_calculated_chemistry.PreCalculatedEquilibriumChemistryTable attribute) (petitRADTRANS.retrieval.runtime.ModelInputs attribute) (petitRADTRANS.retrieval.runtime.ModelResult attribute) (petitRADTRANS.spectral_model.SpectralModel attribute) TerminationCondition (in module petitRADTRANS.retrieval.sampler) TEST (petitRADTRANS.sbi.dataset.DatasetSplit attribute) (petitRADTRANS.sbi.DatasetSplit attribute) test_plotting (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) test_time_validation (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) test_time_validation_cases (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) test_time_validation_samples (petitRADTRANS.sbi.config.RefinementConfig attribute) (petitRADTRANS.sbi.RefinementConfig attribute) tfp (in module petitRADTRANS.retrieval.sampler) tfpd (in module petitRADTRANS.retrieval.retrieval_config) tgrid (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) threshold (petitRADTRANS.sbi.inference.OODDiagnostic attribute) (petitRADTRANS.sbi.OODDiagnostic attribute) TIME_SERIES (petitRADTRANS.sbi.observation.ObservationModality attribute) (petitRADTRANS.sbi.ObservationModality attribute) time_series_config (petitRADTRANS.retrieval.data.TimeSeriesData attribute) time_series_gradient_emission (in module petitRADTRANS.retrieval.models) time_series_gradient_emission() (in module petitRADTRANS.retrieval.models) TimeSeriesData (class in petitRADTRANS.retrieval.data) TINIEST (in module petitRADTRANS.radtrans_core.linalg) (in module petitRADTRANS.radtrans_core.radiative_transfer_core) to_likelihood_state() (petitRADTRANS.retrieval.data.Data method) (petitRADTRANS.retrieval.data.PhotometryData method) to_observation_state() (petitRADTRANS.retrieval.data.Data method) (petitRADTRANS.retrieval.data.PhotometryData method) (petitRADTRANS.retrieval.data.TimeSeriesData method) to_payload() (petitRADTRANS.sbi.artifacts.ArtifactMetadata method) (petitRADTRANS.sbi.artifacts.RegisteredArtifact method) (petitRADTRANS.sbi.dataset.SimulationDatasetManifest method) (petitRADTRANS.sbi.ObservationValueConstraint method) (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats method) (petitRADTRANS.sbi.preprocessing.TaskPreprocessingMetadata method) (petitRADTRANS.sbi.task.ObservationValueConstraint method) (petitRADTRANS.sbi.TaskPreprocessingMetadata method) to_run_config() (petitRADTRANS.sbi.config.SBIConfig method) (petitRADTRANS.sbi.SBIConfig method) topological_sort() (in module petitRADTRANS.utils) total_num_likelihood_evaluations (petitRADTRANS.retrieval.multichain.NestedChainArrays attribute) trace (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimizeResult attribute) TRAIN (petitRADTRANS.sbi.dataset.DatasetSplit attribute) (petitRADTRANS.sbi.DatasetSplit attribute) training (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) training_artifacts (petitRADTRANS.sbi.flows.base.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.flows.PersistentPosteriorEstimator attribute) (petitRADTRANS.sbi.PersistentPosteriorEstimator attribute) training_diagnostics_plot_interval (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) training_loss() (in module petitRADTRANS.sbi.flows.objectives) training_objective (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.TrainingConfig attribute) TrainingArtifacts (class in petitRADTRANS.sbi.flows) (class in petitRADTRANS.sbi.flows.base) TrainingConfig (class in petitRADTRANS.sbi) (class in petitRADTRANS.sbi.config) TrainingSchemeConfig (class in petitRADTRANS.sbi.training) transform_cube_to_physical() (petitRADTRANS.retrieval.runtime.ParameterLayout method) transform_cube_to_physical_batch() (petitRADTRANS.retrieval.runtime.ParameterLayout method) transform_positions (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationSampler attribute) transform_prior_cube_coordinate (petitRADTRANS.retrieval.parameter.Parameter attribute) transform_unconstrained() (petitRADTRANS.retrieval.runtime.ParameterLayout method) transform_unconstrained_batch() (petitRADTRANS.retrieval.runtime.ParameterLayout method) transform_units (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.ConditionalNeuralAutoregressiveTransform attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveFlow attribute) (petitRADTRANS.sbi.flows.transforms.ConditionalNeuralAutoregressiveTransform attribute) transit_depth (petitRADTRANS.planet.Planet attribute) transit_depth_error_lower (petitRADTRANS.planet.Planet attribute) transit_depth_error_upper (petitRADTRANS.planet.Planet attribute) transit_duration (petitRADTRANS.planet.Planet attribute) transit_duration_error_lower (petitRADTRANS.planet.Planet attribute) transit_duration_error_upper (petitRADTRANS.planet.Planet attribute) transit_midpoint_time (petitRADTRANS.planet.Planet attribute) transit_midpoint_time_error_lower (petitRADTRANS.planet.Planet attribute) transit_midpoint_time_error_upper (petitRADTRANS.planet.Planet attribute) transit_radii (petitRADTRANS.spectral_model.SpectralModel attribute) transmission_g_tot_ck_scat() (in module petitRADTRANS.radtrans_core.radiative_transfer_core) tree (in module petitRADTRANS.retrieval.sampler) tree_flatten() (petitRADTRANS.retrieval.runtime.ModelInputs method) (petitRADTRANS.retrieval.runtime.ModelResult method) (petitRADTRANS.retrieval.runtime.PhysicalParams method) (petitRADTRANS.spectral_model.SpectralModel method) (petitRADTRANS.utils.LockedDict method) tree_unflatten() (petitRADTRANS.retrieval.runtime.ModelInputs class method) (petitRADTRANS.retrieval.runtime.ModelResult class method) (petitRADTRANS.retrieval.runtime.PhysicalParams class method) (petitRADTRANS.spectral_model.SpectralModel class method) (petitRADTRANS.utils.LockedDict class method) tree_util (in module petitRADTRANS.retrieval.sampler) trim_spectrum() (in module petitRADTRANS.retrieval.preparing) true_obliquity (petitRADTRANS.planet.Planet attribute) true_obliquity_error_lower (petitRADTRANS.planet.Planet attribute) true_obliquity_error_upper (petitRADTRANS.planet.Planet attribute) truth_parameter_values (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) truths (petitRADTRANS.sbi.calibration.SimulationBasedCalibrationReport attribute) (petitRADTRANS.sbi.SimulationBasedCalibrationReport attribute) tuple_init() (in module petitRADTRANS.utils) U ultranest (in module petitRADTRANS.retrieval.sampler) UltranestSampler (class in petitRADTRANS.retrieval.sampler) um2hz() (in module petitRADTRANS.physics) uncertainties (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) uncertainties_mode (petitRADTRANS.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.retrieval.Retrieval attribute) (petitRADTRANS.retrieval.sampler.SamplerContext attribute) uncertainty_iqr (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) uncertainty_iqr_per_wl (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) uncertainty_mean (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) uncertainty_median (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) uncertainty_median_per_wl (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) uncertainty_std (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) unconstrained_parameters (petitRADTRANS.sbi.SimulationBatch attribute) (petitRADTRANS.sbi.simulator.SimulationBatch attribute) unconstrained_samples (petitRADTRANS.retrieval.multichain.MCMCChainArrays attribute) (petitRADTRANS.retrieval.optimal_estimation.OptimalEstimationResults attribute) (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) uniform_prior() (in module petitRADTRANS.retrieval.utils) UniformSampler (in module petitRADTRANS.retrieval.sampler) unit_convert() (in module petitRADTRANS.opacities.correlated_k_binning) units (petitRADTRANS.retrieval.parameter.Parameter attribute) unlock() (petitRADTRANS.utils.LockedDict method) unpack_model_output() (in module petitRADTRANS.retrieval.utils) update() (petitRADTRANS.utils.LockedDict method) update_atom_abundances() (in module petitRADTRANS.chemistry.prt_easychem) update_bins() (petitRADTRANS.retrieval.data.Data method) update_figure_font_size() (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) update_latest_run_pointer() (in module petitRADTRANS.sbi.artifacts) update_model_functions_map() (petitRADTRANS.spectral_model.SpectralModel method) update_spectral_calculation_parameters() (petitRADTRANS.spectral_model.SpectralModel method) use_base_affine (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.FlowConfig attribute) (petitRADTRANS.sbi.FlowConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) use_cosine_schedule (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) use_vectorized_runtime (petitRADTRANS.sbi.SimulationConfig attribute) (petitRADTRANS.sbi.task.SimulationConfig attribute) user_input() (in module petitRADTRANS.utils) V v_band_extinction (petitRADTRANS.retrieval.runtime.ModelInputs attribute) v_band_reddening (petitRADTRANS.retrieval.runtime.ModelInputs attribute) validate() (petitRADTRANS.retrieval.multichain.ChainExecution class method) validate_artifact_metadata() (petitRADTRANS.sbi.SBITask method) (petitRADTRANS.sbi.task.SBITask method) validate_model_output() (in module petitRADTRANS.retrieval.utils) validate_observation_schema() (petitRADTRANS.sbi.SBITask method) (petitRADTRANS.sbi.task.SBITask method) VALIDATION (petitRADTRANS.sbi.dataset.DatasetSplit attribute) (petitRADTRANS.sbi.DatasetSplit attribute) validation_max_cases (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) validation_metrics (petitRADTRANS.sbi.flows.base.TrainingArtifacts attribute) (petitRADTRANS.sbi.flows.TrainingArtifacts attribute) value (petitRADTRANS.retrieval.parameter.Parameter attribute) value_iqr (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) value_iqr_per_wl (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) value_mean (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) value_median (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) value_median_per_wl (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) value_std (petitRADTRANS.sbi.preprocessing.BlockNormalizationStats attribute) values (petitRADTRANS.sbi.observation.ObservationBlock attribute) (petitRADTRANS.sbi.ObservationBlock attribute) vapour_pressure_al2o3() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_caal12o19() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_catio3() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_ch4() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_cr() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_fe_liquid() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_fe_solid() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_h2o() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_kcl() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_mg2sio4() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_mgsio3() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_mns() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_na2s() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_nh3() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_sio() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_sio2() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_tio2() (in module petitRADTRANS.chemistry.vapour_pressures) vapour_pressure_zns() (in module petitRADTRANS.chemistry.vapour_pressures) variability_atmospheric_column_model_flux_return_mode (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.data.TimeSeriesData attribute) (petitRADTRANS.retrieval.runtime.ModelContext attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) VECTORISED (petitRADTRANS.retrieval.multichain.ChainExecution attribute) vega_mag (petitRADTRANS.synthetic_photometry.ReadFilter attribute) (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) verbose_diagnostics (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) verbose_training_diagnostics (petitRADTRANS.sbi.config.SBIConfig attribute) (petitRADTRANS.sbi.SBIConfig attribute) verdict (petitRADTRANS.sbi.PosteriorInformativenessReport attribute) version (petitRADTRANS.sbi.artifacts.ArtifactMetadata attribute) (petitRADTRANS.sbi.preprocessing.TaskPreprocessingMetadata attribute) (petitRADTRANS.sbi.TaskPreprocessingMetadata attribute) vmap (in module petitRADTRANS.retrieval.sampler) volume_mixing_ratios2mass_fractions() (in module petitRADTRANS.chemistry.utils) volume_mixing_ratios2metallicity() (in module petitRADTRANS.chemistry.utils) W warmup_epochs (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) warmup_fraction (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) warmup_parameters (petitRADTRANS.retrieval.sampler.BlackJAXSamplingResults attribute) (petitRADTRANS.retrieval.sampler.NumPyroSamplingResults attribute) wavel_range (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) wavelength2frequency() (in module petitRADTRANS.physics) wavelength_bin_widths (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.data.PhotometryData attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) wavelength_boundaries (petitRADTRANS.radtrans.Radtrans property) (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.data.PhotometryData attribute) wavelength_grid (petitRADTRANS.stellar_spectra.phoenix.PhoenixStarTable attribute) wavelength_max (petitRADTRANS.opacities.opacities.Opacity attribute) wavelength_min (petitRADTRANS.opacities.opacities.Opacity attribute) wavelength_range() (petitRADTRANS.synthetic_photometry.ReadFilter method) wavelength_units (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) wavelengths (petitRADTRANS.retrieval.data.Data attribute) (petitRADTRANS.retrieval.runtime.ModelResult attribute) (petitRADTRANS.retrieval.runtime.ObservationState attribute) (petitRADTRANS.spectral_model.SpectralModel attribute) wavenumber_units (in module petitRADTRANS.plotlib) (in module petitRADTRANS.plotlib.style) weight_decay (petitRADTRANS.sbi.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.config.TrainingConfig attribute) (petitRADTRANS.sbi.flows.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.flows.posterior.ConditionalFlowPosterior attribute) (petitRADTRANS.sbi.training.TrainingSchemeConfig attribute) (petitRADTRANS.sbi.TrainingConfig attribute) weights (petitRADTRANS.opacities.correlated_k_binning.Data_table attribute) (petitRADTRANS.sbi.flows.base.PosteriorSamples attribute) (petitRADTRANS.sbi.flows.PosteriorSamples attribute) (petitRADTRANS.sbi.PosteriorSamples attribute) whitened_jacobian (petitRADTRANS.sbi.calibration.LocalSensitivityPointReport attribute) (petitRADTRANS.sbi.LocalSensitivityPointReport attribute) width (petitRADTRANS.retrieval.retrieval_config.RetrievalConfig attribute) (petitRADTRANS.retrieval.RetrievalConfig attribute) with_velocity_range() (petitRADTRANS.spectral_model.SpectralModel class method) wn_unit (petitRADTRANS.opacities.correlated_k_binning.Spectral_object attribute) wnedges (petitRADTRANS.opacities.correlated_k_binning.Spectral_object attribute) wns (petitRADTRANS.opacities.correlated_k_binning.Spectral_object attribute) WORKING_JAX_DTYPE (in module petitRADTRANS.jax_dtype) WORKING_TINIEST (in module petitRADTRANS.radtrans_core.radiative_transfer_core) write() (petitRADTRANS.opacities.CIAOpacity class method) (petitRADTRANS.opacities.CloudOpacity class method) (petitRADTRANS.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.CIAOpacity class method) (petitRADTRANS.opacities.opacities.CloudOpacity class method) (petitRADTRANS.opacities.opacities.CorrelatedKOpacity class method) (petitRADTRANS.opacities.opacities.LineByLineOpacity class method) (petitRADTRANS.opacities.opacities.Opacity static method) write_chain_launcher() (petitRADTRANS.retrieval.Retrieval class method) (petitRADTRANS.retrieval.retrieval.Retrieval class method) write_cia_opacities() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.write) write_cloud_opacities() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.write) write_correlated_k() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.write) write_hdf5() (petitRADTRANS.opacities.correlated_k_binning.Ktable method) write_hdf5_common() (petitRADTRANS.opacities.correlated_k_binning.Ktable method) write_json() (in module petitRADTRANS.sbi.artifacts) write_line_by_line() (in module petitRADTRANS.opacities.file_conversion) (in module petitRADTRANS.opacities.write) write_request_file() (in module petitRADTRANS.cli.eso_etc_cli) write_run_manifest() (in module petitRADTRANS.sbi.artifacts) X x (petitRADTRANS.planet.Planet attribute) Y y (petitRADTRANS.planet.Planet attribute) Z z (petitRADTRANS.planet.Planet attribute) zero_point (petitRADTRANS.synthetic_photometry.SyntheticPhotometry attribute) zhang_2023_temperature_profile() (in module petitRADTRANS.temperature_profiles) (in module petitRADTRANS.temperature_profiles.gradient)
